Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006772.1 Kokia drynarioides strain JFW-HI SEQ_121371, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4063
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.36


Found at i:2295 original size:11 final size:11

Alignment explanation


    Indices: 2279--2303  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       2269 GATCGCCCAA

                       
       2279 AGGCTATAAAT
          1 AGGCTATAAAT

                       
       2290 AGGCTATAAAT
          1 AGGCTATAAAT

               
       2301 AGG
          1 AGG

       2304 GTCCTTTAGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24


Consensus pattern (11 bp):   
AGGCTATAAAT
Done.