Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006774.1 Kokia drynarioides strain JFW-HI SEQ_121373, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3086
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:1243 original size:24 final size:24

Alignment explanation


    Indices: 1216--1263  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1206 AAAAAAAAGG

                 *                  
       1216 GGGTTTATAGAAGACAGATTTTTA
          1 GGGTTCATAGAAGACAGATTTTTA

                                    
       1240 GGGTTCATAGAAGACAGATTTTTA
          1 GGGTTCATAGAAGACAGATTTTTA

       1264 AAAAAATAGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.33, C:0.06, G:0.25, T:0.35


Consensus pattern (24 bp):   
GGGTTCATAGAAGACAGATTTTTA
Done.