Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000678.1 Kokia drynarioides strain JFW-HI SEQ_111672, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9320
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34


Found at i:2511 original size:16 final size:17

Alignment explanation


    Indices: 2476--2513  Score: 51
    Period size: 16  Copynumber: 2.3  Consensus size: 17

       2466 CCCCACCTTG

                        *  * 
       2476 ACAAGAATTCTCTACTA
          1 ACAAGAATTCTCAACGA

                             
       2493 ACAAGAA-TCTCAACGA
          1 ACAAGAATTCTCAACGA

                 
       2509 ACAAG
          1 ACAAG

       2514 TTCTCCACCT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  16   12  0.63
  17    7  0.37

ACGTcount: A:0.47, C:0.24, G:0.11, T:0.18


Consensus pattern (17 bp):   
ACAAGAATTCTCAACGA

Found at i:6890 original size:33 final size:33

Alignment explanation


    Indices: 6848--6912  Score: 96
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       6838 TCAACATAAG

                                              
       6848 TGATTGGAACATCTATCA-AGGCAGCTTCATCAA
          1 TGATTGGAACATCTAT-AGAGGCAGCTTCATCAA

                          *   *             
       6881 TGATTGGAACATCTCTAGGGGCAGCTTCATCA
          1 TGATTGGAACATCTATAGAGGCAGCTTCATCA

       6913 TTTTGTTCGA


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  32    1  0.03
  33   28  0.97

ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28


Consensus pattern (33 bp):   
TGATTGGAACATCTATAGAGGCAGCTTCATCAA
Done.