Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006783.1 Kokia drynarioides strain JFW-HI SEQ_121382, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7944
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:3560 original size:15 final size:15

Alignment explanation


    Indices: 3540--3569  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       3530 TAGTGCCTAC

                           
       3540 AAATACGCTCTTTTT
          1 AAATACGCTCTTTTT

                           
       3555 AAATACGCTCTTTTT
          1 AAATACGCTCTTTTT

       3570 CAATGAAAAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.27, C:0.20, G:0.07, T:0.47


Consensus pattern (15 bp):   
AAATACGCTCTTTTT

Found at i:6679 original size:19 final size:19

Alignment explanation


    Indices: 6657--6693  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       6647 GTTATTGTTG

                               
       6657 TTACTTGAACTTATGTTTT
          1 TTACTTGAACTTATGTTTT

                        *     
       6676 TTACTTGAACTTTTGTTT
          1 TTACTTGAACTTATGTTT

       6694 ATTTTTTATT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.19, C:0.11, G:0.11, T:0.59


Consensus pattern (19 bp):   
TTACTTGAACTTATGTTTT
Done.