Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006787.1 Kokia drynarioides strain JFW-HI SEQ_121386, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6345
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32


Found at i:3612 original size:14 final size:13

Alignment explanation


    Indices: 3588--3621  Score: 50
    Period size: 14  Copynumber: 2.5  Consensus size: 13

       3578 AGAGTGTTTG

                          
       3588 AAAAGTATAAAAAT
          1 AAAA-TATAAAAAT

                          
       3602 ATAAATATAAAAAT
          1 A-AAATATAAAAAT

                  
       3616 AAAATA
          1 AAAATA

       3622 AGGTAAAAGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  13    5  0.26
  14   11  0.58
  15    3  0.16

ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24


Consensus pattern (13 bp):   
AAAATATAAAAAT
Done.