Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006789.1 Kokia drynarioides strain JFW-HI SEQ_121388, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5983
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38


Found at i:927 original size:23 final size:24

Alignment explanation


    Indices: 883--937  Score: 69
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        873 ATTTTTATTT

                          *         
        883 TTTTTAATTTATATTTTAACAATA
          1 TTTTTAATTTATATATTAACAATA

                                     
        907 TTTTTAATTTATCA-ATT-ACAATA
          1 TTTTTAATTTAT-ATATTAACAATA

               *    
        930 TTTCTAAT
          1 TTTTTAAT

        938 CAAACCGCAA


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  23   13  0.46
  24   14  0.50
  25    1  0.04

ACGTcount: A:0.36, C:0.07, G:0.00, T:0.56


Consensus pattern (24 bp):   
TTTTTAATTTATATATTAACAATA
Done.