Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006797.1 Kokia drynarioides strain JFW-HI SEQ_121396, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5329
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.32


Found at i:685 original size:25 final size:25

Alignment explanation


    Indices: 657--745  Score: 160
    Period size: 25  Copynumber: 3.6  Consensus size: 25

        647 GACAGAATCA

                                *    
        657 CGCTCTTACGAGCCAAATAGAATAT
          1 CGCTCTTACGAGCCAAATAGTATAT

                                     
        682 CGCTCTTACGAGCCAAATAGTATAT
          1 CGCTCTTACGAGCCAAATAGTATAT

                               *     
        707 CGCTCTTACGAGCCAAATATTATAT
          1 CGCTCTTACGAGCCAAATAGTATAT

                          
        732 CGCTCTTACGAGCC
          1 CGCTCTTACGAGCC

        746 TGGACAAAAT


Statistics
Matches: 62,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  25   62  1.00

ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27


Consensus pattern (25 bp):   
CGCTCTTACGAGCCAAATAGTATAT
Done.