Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006803.1 Kokia drynarioides strain JFW-HI SEQ_121402, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3284
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35


Found at i:265 original size:3 final size:3

Alignment explanation


    Indices: 250--305  Score: 103
    Period size: 3  Copynumber: 18.7  Consensus size: 3

        240 AAAGAAAAGT

                    *                                                      
        250 TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA

                      
        298 TAA TAA TA
          1 TAA TAA TA

        306 TATATATGTA


Statistics
Matches: 51,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   51  1.00

ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32


Consensus pattern (3 bp):   
TAA

Found at i:1789 original size:56 final size:56

Alignment explanation


    Indices: 1703--1815  Score: 208
    Period size: 56  Copynumber: 2.0  Consensus size: 56

       1693 AAATTTAAGC

                 *                                                  
       1703 AACAACACACCATCCTCGTGGGATCGATATCCGATAGATTCATCTATATCTACTAT
          1 AACAAAACACCATCCTCGTGGGATCGATATCCGATAGATTCATCTATATCTACTAT

                                                         *          
       1759 AACAAAACACCATCCTCGTGGGATCGATATCCGATAGATTCATCTCTATCTACTAT
          1 AACAAAACACCATCCTCGTGGGATCGATATCCGATAGATTCATCTATATCTACTAT

             
       1815 A
          1 A

       1816 CTTGCATCGA


Statistics
Matches: 55,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  56   55  1.00

ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28


Consensus pattern (56 bp):   
AACAAAACACCATCCTCGTGGGATCGATATCCGATAGATTCATCTATATCTACTAT
Done.