Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006805.1 Kokia drynarioides strain JFW-HI SEQ_121404, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 813

Length: 1356
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34


Found at i:990 original size:13 final size:11

Alignment explanation


    Indices: 962--1004  Score: 52
    Period size: 11  Copynumber: 3.8  Consensus size: 11

        952 AGTTAAATAT

                       
        962 TATTTTATTAA
          1 TATTTTATTAA

                         
        973 TATTTTACTTAGA
          1 TATTTTA-TTA-A

                      *
        986 TA-TTTATTAT
          1 TATTTTATTAA

                     
        996 TATTTTATT
          1 TATTTTATT

       1005 TAGAAAATTG


Statistics
Matches: 28,  Mismatches: 1, Indels: 6
        0.80            0.03        0.17

Matches are distributed among these distances:
  10    2  0.07
  11   16  0.57
  12    7  0.25
  13    3  0.11

ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65


Consensus pattern (11 bp):   
TATTTTATTAA

Found at i:991 original size:23 final size:23

Alignment explanation


    Indices: 965--1008  Score: 70
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        955 TAAATATTAT

                                   
        965 TTTATTAATATTTTACTTAGATA
          1 TTTATTAATATTTTACTTAGATA

                   *       *     
        988 TTTATTATTATTTTATTTAGA
          1 TTTATTAATATTTTACTTAGA

       1009 AAATTGTAGT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61


Consensus pattern (23 bp):   
TTTATTAATATTTTACTTAGATA
Done.