Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006814.1 Kokia drynarioides strain JFW-HI SEQ_121413, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4130
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31


Found at i:1210 original size:34 final size:34

Alignment explanation


    Indices: 1135--1216  Score: 101
    Period size: 34  Copynumber: 2.4  Consensus size: 34

       1125 TAAATATATA

                                  *           
       1135 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
          1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT

            * *                     *   * **  
       1169 GATAATCGATTCAAAAGAAGCAATCTTCGAGTAT
          1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT

                          
       1203 AACAATCGATTCAA
          1 AACAATCGATTCAA

       1217 TCCAAATTTG


Statistics
Matches: 39,  Mismatches: 9, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  34   39  1.00

ACGTcount: A:0.45, C:0.18, G:0.13, T:0.23


Consensus pattern (34 bp):   
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Done.