Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006815.1 Kokia drynarioides strain JFW-HI SEQ_121414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7063
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32


Found at i:6317 original size:26 final size:26

Alignment explanation


    Indices: 6252--6353  Score: 154
    Period size: 26  Copynumber: 4.0  Consensus size: 26

       6242 GCTAAACACT

                                       
       6252 CACCGGCTCGAAGCCTGCTAACAT-T-
          1 CACCGGCTCGAAGCCTGCTAA-ATATA

               *                      
       6277 CACTGGCTCGAAGCCTGCTAAATATA
          1 CACCGGCTCGAAGCCTGCTAAATATA

                     *                
       6303 CACCGGCTCAAAGCCTGCTAAATATA
          1 CACCGGCTCGAAGCCTGCTAAATATA

                            *        
       6329 CACCGGCTCGAAGCCTACTAAATAT
          1 CACCGGCTCGAAGCCTGCTAAATAT

       6354 TCTCTTATTT


Statistics
Matches: 70,  Mismatches: 5, Indels: 3
        0.90            0.06        0.04

Matches are distributed among these distances:
  24    2  0.03
  25   21  0.30
  26   47  0.67

ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21


Consensus pattern (26 bp):   
CACCGGCTCGAAGCCTGCTAAATATA

Done.