Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006825.1 Kokia drynarioides strain JFW-HI SEQ_121424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 245244
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--28 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29 GTTTAATCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1307 original size:20 final size:20
Alignment explanation
Indices: 1284--1324 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
1274 GGCAGGGTAT
1284 TGCATAC-AGGGTCATCGAAG
1 TGCATACAAGGG-CATCGAAG
*
1304 TGCATACAAGGGCATTGAAG
1 TGCATACAAGGGCATCGAAG
1324 T
1 T
1325 ATGTACAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (20 bp):
TGCATACAAGGGCATCGAAG
Found at i:3426 original size:18 final size:18
Alignment explanation
Indices: 3358--3428 Score: 58
Period size: 18 Copynumber: 3.9 Consensus size: 18
3348 TAATATTCCA
*
3358 AAAAATAAAATATTTTAG-
1 AAAAAT-AAATATTTTGGT
3376 AAAAATAAAT-TTTATGGTT
1 AAAAATAAATATTT-TGG-T
** *
3395 TTAAAT-AATTTTTTGGT
1 AAAAATAAATATTTTGGT
3412 AAAAATAAATATTTTGG
1 AAAAATAAATATTTTGG
3429 GTTAAATTGG
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
16 3 0.07
17 11 0.26
18 21 0.50
19 7 0.17
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (18 bp):
AAAAATAAATATTTTGGT
Found at i:5252 original size:22 final size:22
Alignment explanation
Indices: 5223--5301 Score: 131
Period size: 22 Copynumber: 3.6 Consensus size: 22
5213 GGATGTATTA
5223 TGCCAATATAATTGATTGATTG
1 TGCCAATATAATTGATTGATTG
* *
5245 CGCCAATATAATTGATTGATTA
1 TGCCAATATAATTGATTGATTG
*
5267 TTCCAATATAATTGATTGATTG
1 TGCCAATATAATTGATTGATTG
5289 TGCCAATATAATT
1 TGCCAATATAATT
5302 AAATGTTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (22 bp):
TGCCAATATAATTGATTGATTG
Found at i:8149 original size:21 final size:21
Alignment explanation
Indices: 8125--8172 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
8115 TCTCCTCATC
* *
8125 CTTCTCTT-CTTCTTTTTCTTT
1 CTTCTCTTCCTT-ATTTTCCTT
8146 CTTCTCTTCCTTATTTTCCTT
1 CTTCTCTTCCTTATTTTCCTT
8167 CTTCTC
1 CTTCTC
8173 CTCAGGTTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (21 bp):
CTTCTCTTCCTTATTTTCCTT
Found at i:9986 original size:16 final size:16
Alignment explanation
Indices: 9962--10006 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
9952 CATAGAATCT
*
9962 AAAAAGAAATAGA-TA
1 AAAAAGAAATAAAGTA
9977 AAAGAAGAAATAAAGTA
1 AAA-AAGAAATAAAGTA
9994 AAAAAGAAATAAA
1 AAAAAGAAATAAA
10007 CATAAATGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 3 0.11
16 19 0.70
17 5 0.19
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (16 bp):
AAAAAGAAATAAAGTA
Found at i:23679 original size:9 final size:9
Alignment explanation
Indices: 23665--23689 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
23655 GAATGCATAA
23665 GTAAAATAT
1 GTAAAATAT
23674 GTAAAATAT
1 GTAAAATAT
23683 GTAAAAT
1 GTAAAAT
23690 CGGGTGATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (9 bp):
GTAAAATAT
Found at i:28410 original size:115 final size:115
Alignment explanation
Indices: 28261--28490 Score: 352
Period size: 115 Copynumber: 2.0 Consensus size: 115
28251 ATAACTTGAA
*
28261 AATAAAAATGAAATGTCATAATGATAAAAGGGGATTCCCAACGTGAATTTTCAACAGAACACTAA
1 AATAAAAATGAAATGTCATAATGATAAAAGGGGATTCCCAACGTGAATATTCAACAGAACACTAA
* * *
28326 GTGCTTCTCACAAGATATGAAGGATAGGTGATTGTTATTGCAATTAAGTG
66 GTGCTTCTCACAAGATATGAAGGATAAGTGATTGTCATTGCAATAAAGTG
* * * *
28376 AATAAAAATGAAATGTGATAATGATAAAATGGGATTCCCAACGTGAATATTCAACATAATACTAA
1 AATAAAAATGAAATGTCATAATGATAAAAGGGGATTCCCAACGTGAATATTCAACAGAACACTAA
* * * *
28441 GTGTTTTTTACAAGATATGAAGGATAAGTGATTGTCGTTGCAATAAAGTG
66 GTGCTTCTCACAAGATATGAAGGATAAGTGATTGTCATTGCAATAAAGTG
28491 CAATTAATAT
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 103 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (115 bp):
AATAAAAATGAAATGTCATAATGATAAAAGGGGATTCCCAACGTGAATATTCAACAGAACACTAA
GTGCTTCTCACAAGATATGAAGGATAAGTGATTGTCATTGCAATAAAGTG
Found at i:30727 original size:15 final size:15
Alignment explanation
Indices: 30704--30753 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
30694 CTTTAGCTAA
30704 TTCTTTCTCAGCATT
1 TTCTTTCTCAGCATT
* *
30719 TTTTTTCTCAACATT
1 TTCTTTCTCAGCATT
* *
30734 TTCTTCCTCAGCATC
1 TTCTTTCTCAGCATT
30749 TTCTT
1 TTCTT
30754 CCTTCTCGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.14, C:0.28, G:0.04, T:0.54
Consensus pattern (15 bp):
TTCTTTCTCAGCATT
Found at i:34813 original size:19 final size:19
Alignment explanation
Indices: 34772--34815 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
34762 CAATAATTGG
* **
34772 GAGAGATTGTTATCATCGG
1 GAGAGATTGTTATCACCAA
34791 GAGAGATTGTTATCACCAA
1 GAGAGATTGTTATCACCAA
34810 GAGAGA
1 GAGAGA
34816 CATACTTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (19 bp):
GAGAGATTGTTATCACCAA
Found at i:42264 original size:22 final size:22
Alignment explanation
Indices: 42235--42292 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
42225 GATGTATTAT
42235 GCCAATATAATTGATTGATTGC
1 GCCAATATAATTGATTGATTGC
* *
42257 TCCAATATAATTGATTGATTGG
1 GCCAATATAATTGATTGATTGC
*
42279 GCCAATTTAATTGA
1 GCCAATATAATTGA
42293 ATGTTTATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (22 bp):
GCCAATATAATTGATTGATTGC
Found at i:44452 original size:21 final size:21
Alignment explanation
Indices: 44413--44453 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
44403 CGACCATGTA
* **
44413 CCTCCATCACACAGGCGTGTT
1 CCTCAATCACACAACCGTGTT
44434 CCTCAATCACACAACCGTGT
1 CCTCAATCACACAACCGTGT
44454 GCCCTGTCAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.39, G:0.15, T:0.22
Consensus pattern (21 bp):
CCTCAATCACACAACCGTGTT
Found at i:46105 original size:23 final size:23
Alignment explanation
Indices: 46071--46346 Score: 340
Period size: 23 Copynumber: 12.0 Consensus size: 23
46061 TCCATTTGCA
*
46071 CATAAATCACATTAATAATTAAG
1 CATAAATCACATTAATATTTAAG
*
46094 CATAAATAACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
*
46117 CACAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
46140 CATAAATCACATTAACT-TTTAAG
1 CATAAATCACATTAA-TATTTAAG
* **
46163 TATAAATCATTTTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* * *
46186 CACAAATAACATTAATATCTAAG
1 CATAAATCACATTAATATTTAAG
* * *
46209 CACAAATCTCATTAACATTTAAG
1 CATAAATCACATTAATATTTAAG
46232 CATAAATCACATTAACT-TTTAAG
1 CATAAATCACATTAA-TATTTAAG
* *
46255 TATAAATCATATTAATATTTTAAG
1 CATAAATCACATTAATA-TTTAAG
* *
46279 CACAAATCACATTAATACTTAAG
1 CATAAATCACATTAATATTTAAG
46302 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* * *
46325 TACAAATCGCATTAATATTTAA
1 CATAAATCACATTAATATTTAA
46347 CACATTTTAT
Statistics
Matches: 216, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
22 2 0.01
23 193 0.89
24 21 0.10
ACGTcount: A:0.47, C:0.14, G:0.04, T:0.34
Consensus pattern (23 bp):
CATAAATCACATTAATATTTAAG
Found at i:46193 original size:92 final size:92
Alignment explanation
Indices: 46072--46339 Score: 410
Period size: 92 Copynumber: 2.9 Consensus size: 92
46062 CCATTTGCAC
* * *
46072 ATAAATCACATTAATAATTAAGCATAAATAACATTAATATTTAAGCACAAATCACATTAATATTT
1 ATAAATCATATTAATATTTAAGCACAAATAACATTAATATTTAAGCACAAATCACATTAATATTT
46137 AAGCATAAATCACATTAACTTTTAAGT
66 AAGCATAAATCACATTAACTTTTAAGT
* * * *
46164 ATAAATCATTTTAATATTTAAGCACAAATAACATTAATATCTAAGCACAAATCTCATTAACATTT
1 ATAAATCATATTAATATTTAAGCACAAATAACATTAATATTTAAGCACAAATCACATTAATATTT
46229 AAGCATAAATCACATTAACTTTTAAGT
66 AAGCATAAATCACATTAACTTTTAAGT
* * *
46256 ATAAATCATATTAATATTTTAAGCACAAATCACATTAATACTTAAGCATAAATCACATTAATATT
1 ATAAATCATATTAATA-TTTAAGCACAAATAACATTAATATTTAAGCACAAATCACATTAATATT
* * *
46321 TAAGTACAAATCGCATTAA
65 TAAGCATAAATCACATTAA
46340 TATTTAACAC
Statistics
Matches: 158, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
92 100 0.63
93 58 0.37
ACGTcount: A:0.47, C:0.14, G:0.04, T:0.34
Consensus pattern (92 bp):
ATAAATCATATTAATATTTAAGCACAAATAACATTAATATTTAAGCACAAATCACATTAATATTT
AAGCATAAATCACATTAACTTTTAAGT
Found at i:46831 original size:36 final size:36
Alignment explanation
Indices: 46754--46831 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
46744 TATAATCACA
* *
46754 GTCACATGGCATGAAAATCATACCTATATATTTATT
1 GTCACATGGCATGAAAATCATACCTACATATTCATT
46790 GTCACATGGCATGAATAA-CATACCCT-CATATTCACTT
1 GTCACATGGCATGAA-AATCATA-CCTACATATTCA-TT
46827 -TCACA
1 GTCACA
46832 ATAGTCACCA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
36 30 0.81
37 7 0.19
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.32
Consensus pattern (36 bp):
GTCACATGGCATGAAAATCATACCTACATATTCATT
Found at i:48035 original size:9 final size:9
Alignment explanation
Indices: 48021--48102 Score: 54
Period size: 9 Copynumber: 9.9 Consensus size: 9
48011 ACAAATGATT
48021 TTAAAATTA
1 TTAAAATTA
48030 TTAAAATTA
1 TTAAAATTA
48039 TT----TT-
1 TTAAAATTA
*
48043 TTAAAACTA
1 TTAAAATTA
48052 -TAAAATTA
1 TTAAAATTA
*
48060 TTAAATTTAA
1 TTAAAATT-A
* *
48070 TTTAAATTT
1 TTAAAATTA
*
48079 TTTAAA-TA
1 TTAAAATTA
48087 -TAAAATTA
1 TTAAAATTA
48095 TTAAAATT
1 TTAAAATT
48103 TTTTAAAAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 18
0.68 0.10 0.22
Matches are distributed among these distances:
4 2 0.04
5 2 0.04
7 4 0.07
8 11 0.20
9 30 0.54
10 7 0.12
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (9 bp):
TTAAAATTA
Found at i:48055 original size:21 final size:22
Alignment explanation
Indices: 48019--48061 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
48009 CAACAAATGA
*
48019 TTTTAAAATTATTAAAATTATT
1 TTTTAAAACTATTAAAATTATT
48041 TTTTAAAACTA-TAAAATTATT
1 TTTTAAAACTATTAAAATTATT
48062 AAATTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTAAAACTATTAAAATTATT
Found at i:48872 original size:29 final size:26
Alignment explanation
Indices: 48812--48880 Score: 86
Period size: 26 Copynumber: 2.5 Consensus size: 26
48802 AATTAAATTT
*
48812 ATTTAATAATTTTATTATTTAAAAAA
1 ATTTAATAATTTTATTATTAAAAAAA
48838 ATTTAATAATTTCATATT-TTAAAAAATA
1 ATTTAATAATTT--TATTATTAAAAAA-A
48866 ATTTTAATAATTTTA
1 A-TTTAATAATTTTA
48881 AAACCATTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
26 12 0.32
27 9 0.24
28 6 0.16
29 11 0.29
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (26 bp):
ATTTAATAATTTTATTATTAAAAAAA
Found at i:49019 original size:29 final size:29
Alignment explanation
Indices: 48972--49051 Score: 124
Period size: 29 Copynumber: 2.8 Consensus size: 29
48962 TTGCCTTCTT
**
48972 AGCGTCGTTAGTCGTTTAACGGCCACATC
1 AGCGTCGTTAGTCCCTTAACGGCCACATC
*
49001 AGCGTCGTTAGTCCCTTAACGGCCACGTC
1 AGCGTCGTTAGTCCCTTAACGGCCACATC
*
49030 AGCATCGTTAGTCCCTTAACGG
1 AGCGTCGTTAGTCCCTTAACGG
49052 TCACGTCAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (29 bp):
AGCGTCGTTAGTCCCTTAACGGCCACATC
Found at i:52293 original size:58 final size:58
Alignment explanation
Indices: 52203--52320 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
52193 TATTATGTAC
*
52203 TTACCAGACTGAATTGCAGTTACGGATAGCCTCTAGGGACTATTCTACTAATTTCCCT
1 TTACCAGACTGAATTGCAGTTACGGATAGCCTCTAGAGACTATTCTACTAATTTCCCT
*
52261 TTACCAGACTGAATTGCAGTTACGGATAGCCTCTAGAGATTATTCTACTAATTTCCCT
1 TTACCAGACTGAATTGCAGTTACGGATAGCCTCTAGAGACTATTCTACTAATTTCCCT
52319 TT
1 TT
52321 TTTACGACCC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (58 bp):
TTACCAGACTGAATTGCAGTTACGGATAGCCTCTAGAGACTATTCTACTAATTTCCCT
Found at i:59735 original size:21 final size:21
Alignment explanation
Indices: 59711--59753 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
59701 TACATAGATA
59711 AGCTTACAAAATAATGATATG
1 AGCTTACAAAATAATGATATG
*
59732 AGCTTACAACATAATGATATG
1 AGCTTACAAAATAATGATATG
59753 A
1 A
59754 ACATCTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.28
Consensus pattern (21 bp):
AGCTTACAAAATAATGATATG
Found at i:59871 original size:26 final size:27
Alignment explanation
Indices: 59813--59891 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 27
59803 TTTCAGAAAT
* * * *
59813 TTAGCTCATATGAGCCCAAACTGAGT-
1 TTAGCTCTTATGAGCCCAGACAGAATA
59839 TTAGCTCTTATGAGCCCAGACAGAATA
1 TTAGCTCTTATGAGCCCAGACAGAATA
* * *
59866 TT-GCTCTTACGA-ACCAGACAAAATA
1 TTAGCTCTTATGAGCCCAGACAGAATA
59891 T
1 T
59892 CACTCTTTCG
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
25 12 0.27
26 31 0.69
27 2 0.04
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (27 bp):
TTAGCTCTTATGAGCCCAGACAGAATA
Found at i:59916 original size:27 final size:27
Alignment explanation
Indices: 59884--59941 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
59874 ACGAACCAGA
* *
59884 CAAAATATCACTCTTTCGATCCAAAAT
1 CAAAATAACACTCTTTCGAGCCAAAAT
* *
59911 CAAAATAACGCTCTTTCGAGCCAGAAT
1 CAAAATAACACTCTTTCGAGCCAAAAT
59938 CAAA
1 CAAA
59942 TTACTCCTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (27 bp):
CAAAATAACACTCTTTCGAGCCAAAAT
Found at i:64079 original size:20 final size:20
Alignment explanation
Indices: 64054--64099 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
64044 TATTTTTATG
*
64054 ATGATTAGAAACATATTTAC
1 ATGATTAGAAACATAATTAC
* **
64074 ATGATTTGAATGATAATTAC
1 ATGATTAGAAACATAATTAC
64094 ATGATT
1 ATGATT
64100 TATTATCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (20 bp):
ATGATTAGAAACATAATTAC
Found at i:74360 original size:30 final size:30
Alignment explanation
Indices: 74325--74384 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
74315 TTTGAAATTT
74325 TTTCGAATCAAATCAAGTTGAGTCAACAAA
1 TTTCGAATCAAATCAAGTTGAGTCAACAAA
* * **
74355 TTTCGAGTCAAGTTGAGTTGAGTCAACAAA
1 TTTCGAATCAAATCAAGTTGAGTCAACAAA
74385 CTTAGCGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (30 bp):
TTTCGAATCAAATCAAGTTGAGTCAACAAA
Found at i:76943 original size:24 final size:24
Alignment explanation
Indices: 76916--76967 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
76906 TAATTATAAA
* *
76916 TATAATCATAATAACTATTATGAT
1 TATAATCATAATAACAATTACGAT
* * *
76940 TATATTTATAATTACAATTACGAT
1 TATAATCATAATAACAATTACGAT
76964 TATA
1 TATA
76968 TCCATATTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (24 bp):
TATAATCATAATAACAATTACGAT
Found at i:76968 original size:24 final size:24
Alignment explanation
Indices: 76923--76968 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
76913 AAATATAATC
* *
76923 ATAATAACTATTATGATTATATTT
1 ATAATAACAATTACGATTATATTT
*
76947 ATAATTACAATTACGATTATAT
1 ATAATAACAATTACGATTATAT
76969 CCATATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (24 bp):
ATAATAACAATTACGATTATATTT
Found at i:83222 original size:3 final size:3
Alignment explanation
Indices: 83214--83263 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
83204 TAAAAACTAA
*
83214 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
83262 AA
1 AA
83264 AGGTAAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:83376 original size:21 final size:21
Alignment explanation
Indices: 83352--83391 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
83342 TATTTTAGTC
* *
83352 ATTTAATTATTAGTTTTTTCG
1 ATTTAATCATTAATTTTTTCG
83373 ATTTAATCATTAATTTTTT
1 ATTTAATCATTAATTTTTT
83392 AAAAATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (21 bp):
ATTTAATCATTAATTTTTTCG
Found at i:92257 original size:77 final size:77
Alignment explanation
Indices: 92072--92396 Score: 311
Period size: 77 Copynumber: 4.2 Consensus size: 77
92062 ATTTTTAGGG
* * * *
92072 TTCGCTCGATTTAATATCGTGATTGTCATTTTTAAAGCTCACACAATTTAAGATCG-ATA-CTTT
1 TTCGCTCGATTTAAGATCGTGATTGTCATTTTTAAGGCTCACTCGATTTAAGATCGCA-ACCTTT
*
92135 CGATATTCTAACAA
65 -GGTATTCTAACAA
* ** * *
92149 TTCACTCGATTTAAGATCGCAATTGTAATTTTTAAGGCT-AGCTCGATTTAAGATCGCGACCTTT
1 TTCGCTCGATTTAAGATCGTGATTGTCATTTTTAAGGCTCA-CTCGATTTAAGATCGCAACCTTT
*
92213 GGTATTTTAACAA
65 GGTATTCTAACAA
* ** * * *
92226 TTCGTTCGATTTAAGATCGTGACTT-TCATTTTTAAGGCTTGCTCGATTTACGATTGCAACCTTC
1 TTCGCTCGATTTAAGATCGTGA-TTGTCATTTTTAAGGCTCACTCGATTTAAGATCGCAACCTTT
* *
92290 GGTATGCTAACAG
65 GGTATTCTAACAA
* * * *
92303 TTTGCTCGATTTTAGATTGCTG-TTATCA-TTTTAAGGCTCACTCGATTTAAGATCGCAACCTTT
1 TTCGCTCGATTTAAGATCG-TGATTGTCATTTTTAAGGCTCACTCGATTTAAGATCGCAACCTTT
* * *
92366 GATGTTCTAACAT
65 GGTATTCTAACAA
* *
92379 TTCACTCAATTTAAGATC
1 TTCGCTCGATTTAAGATC
92397 ATAACATTTG
Statistics
Matches: 199, Mismatches: 42, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
76 55 0.28
77 136 0.68
78 8 0.04
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (77 bp):
TTCGCTCGATTTAAGATCGTGATTGTCATTTTTAAGGCTCACTCGATTTAAGATCGCAACCTTTG
GTATTCTAACAA
Found at i:92272 original size:37 final size:37
Alignment explanation
Indices: 92038--93434 Score: 360
Period size: 37 Copynumber: 36.4 Consensus size: 37
92028 TTCCTAATTC
* * *
92038 GCTCGATTTAAGATCGTG-GTTGTCATTTTT-AGGGTT
1 GCTCGATTTAAGATCGCGACTT-TCATTTTTAAGGCTT
* * * *
92074 CGCTCGATTTAATATCGTGA-TTGTCATTTTTAAAGCTC
1 -GCTCGATTTAAGATCGCGACTT-TCATTTTTAAGGCTT
* * * ** * ***
92112 ACACAATTTAAGATCGATACTTTCGATATTCTAACAATT
1 GCTCGATTTAAGATCGCGACTTTC-AT-TTTTAAGGCTT
* * * *
92151 CACTCGATTTAAGATCGC-AATTGTAATTTTTAAGGCTA
1 -GCTCGATTTAAGATCGCGACTT-TCATTTTTAAGGCTT
** ***
92189 GCTCGATTTAAGATCGCGACCTTTGGTATTTTAACAATT
1 GCTCGATTTAAGATCGCGA-CTTTCAT-TTTTAAGGCTT
* *
92228 CGTTCGATTTAAGATCGTGACTTTCATTTTTAAGGCTT
1 -GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTT
* * * * * ** * *
92266 GCTCGATTTACGATTGCAACCTTCGGTATGCTAACAGTTT
1 GCTCGATTTAAGATCGCGACTTTC-AT-TTTTAA-GGCTT
* * *
92306 GCTCGATTTTAGATTGCTG--TTATCA-TTTTAAGGCTC
1 GCTCGATTTAAGATCGC-GACTT-TCATTTTTAAGGCTT
* * * * ***
92342 ACTCGATTTAAGATCGCAACCTTTGATGTTCTAACATTT
1 GCTCGATTTAAGATCGCGA-CTTTCAT-TTTTAAGGCTT
* * *** * * ***
92381 CACTCAATTTAAGATCATAACATTTGATGTTCTAACATTT
1 -GCTCGATTTAAGATCGCGAC-TTTCAT-TTTTAAGGCTT
* * * *
92421 CACTCGATTTAAGATCACGATTTTCATTTTTTATGGCTCT
1 -GCTCGATTTAAGATCGCGACTTTCA-TTTTTAAGGCT-T
* * * * * *
92461 -CTCGATTTAAGTTTGTGAAC-TTCAGTATTCTAATAGTTT
1 GCTCGATTTAAGATCGCG-ACTTTCA-T-TTTTAA-GGCTT
92500 GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTT
1 GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTT
* ** * *
92537 GCTCAATTTAAGATCATG-GTTGTAATTTTTAAGG-TT
1 GCTCGATTTAAGATCGCGACTT-TCATTTTTAAGGCTT
* * *
92573 CGCTCGATTTAAGATCGC-AATTGTCATTTTTAAGGATC
1 -GCTCGATTTAAGATCGCGACTT-TCATTTTTAAGGCTT
** ** * *
92611 GGACGATTTAAGATTACGACTTTCGATATTCTAATAG-TT
1 GCTCGATTTAAGATCGCGACTTTC-AT-TTTTAA-GGCTT
* ** * *
92650 CACTCGATTTAAGATCATGATTTTCATTTTTAAGGCTC
1 -GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTT
* * * *
92688 GCTCGATTTAAGACCGCGACCTTCGGTATTTTAACAG-TT
1 GCTCGATTTAAGATCGCGACTTTC-AT-TTTTAA-GGCTT
* *
92727 CGCTCGATTTAAGATCGTGACTTTCATTTTTAAAGCTT
1 -GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTT
* * * ***
92765 GCTCGATTTAAGATTGCAACCTTT-GTTATTCTAACAATTT
1 GCTCGATTTAAGATCGCGA-CTTTCATT-TT-TAA-GGCTT
* ** * *
92805 GCTCAAGTTT-AGATTACGACTATCA-TTTTAAGGCTC
1 GCTCGA-TTTAAGATCGCGACTTTCATTTTTAAGGCTT
* * * * * ***
92841 ACTTTGATTTAAGATCGTGACCTTCGATGTTCTAACATTT
1 GC-TCGATTTAAGATCGCGACTTTC-AT-TTTTAAGGCTT
* * * * *
92881 CGATTGATTTAAGATCGTGACTGTCATTTCTTATGGCTCT
1 -GCTCGATTTAAGATCGCGACTTTCATTT-TTAAGGCT-T
* * * * *
92921 -CTCGATTTAAGATCACGAGC-TTCGGTATTCTAACAGTTT
1 GCTCGATTTAAGATCGCGA-CTTTC-AT-TTTTAA-GGCTT
* * *
92960 GCGCGATTTAAGATCGCGACTGTCATTTTTTACGGCTCT
1 GCTCGATTTAAGATCGCGACTTTCA-TTTTTAAGGCT-T
* ** * *
92999 -CTCGATTTAAGATCGTGAGCTTTGGTATTCTAACAG-TT
1 GCTCGATTTAAGATCGCGA-CTTTCAT-TTTTAA-GGCTT
* * *
93037 CGCTCAATTTAAGATCGTGACTGTCATTTTTAAGGCTCT
1 -GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCT-T
* * * * *
93076 -ATC-AGTTTAAGATCGCAAACTTT-AGTATTCTAACAGTTT
1 GCTCGA-TTTAAGATCGC-GACTTTCA-T-TTTTAA-GGCTT
* * *
93115 GCTCGATTTAAGATCGCGGCTCTCAGTTTTAAGGCTT
1 GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTT
* * * * * *
93152 GCTCAATTTAAGATTGCGACTTTTGATTTCTAACAGTTT
1 GCTCGATTTAAGATCGCGAC-TTTCATTTTTAA-GGCTT
* * *
93191 GTTCAATTTAAGATCGTGA-TTGTCATTTTTAAGGCTT
1 GCTCGATTTAAGATCGCGACTT-TCATTTTTAAGGCTT
* * * ** ***
93228 GCTCGATTTAAGATCGCAACATTCAGTACTCCAACAATT
1 GCTCGATTTAAGATCGCGACTTTCA-T-TTTTAAGGCTT
* * * *
93267 CACTCGATTTAAGGTCGCGACTGTCATTTTTAAGGCTC
1 -GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTT
* * * * * ***
93305 ACTTGATTGAAGATCGCGACCTTCAGTATTCTAACAATT
1 GCTCGATTTAAGATCGCGACTTTCA-T-TTTTAAGGCTT
* *
93344 CGCTCGATTTAAGATCGCGACTATCATTTTTAAGGTTT
1 -GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTT
* * * * *
93382 GCTCGATTTTAGATCGCAACTATCTTTTTTAAGGTTT
1 GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTT
* *
93419 GCTTGATTTGAGATCG
1 GCTCGATTTAAGATCG
93435 TGACCTTCGA
Statistics
Matches: 980, Mismatches: 288, Indels: 184
0.67 0.20 0.13
Matches are distributed among these distances:
36 26 0.03
37 333 0.34
38 164 0.17
39 148 0.15
40 305 0.31
41 4 0.00
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (37 bp):
GCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTT
Found at i:92395 original size:40 final size:40
Alignment explanation
Indices: 92340--92438 Score: 162
Period size: 40 Copynumber: 2.5 Consensus size: 40
92330 ATTTTAAGGC
* *
92340 TCACTCGATTTAAGATCGCAACCTTTGATGTTCTAACATT
1 TCACTCGATTTAAGATCACAACATTTGATGTTCTAACATT
* *
92380 TCACTCAATTTAAGATCATAACATTTGATGTTCTAACATT
1 TCACTCGATTTAAGATCACAACATTTGATGTTCTAACATT
92420 TCACTCGATTTAAGATCAC
1 TCACTCGATTTAAGATCAC
92439 GATTTTCATT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.37
Consensus pattern (40 bp):
TCACTCGATTTAAGATCACAACATTTGATGTTCTAACATT
Found at i:92730 original size:40 final size:38
Alignment explanation
Indices: 92672--92777 Score: 119
Period size: 40 Copynumber: 2.8 Consensus size: 38
92662 GATCATGATT
*
92672 TTCATTTTTAAGGC-TCGCTCGATTTAAGACCGCGACC
1 TTCATTTTTAAAGCTTCGCTCGATTTAAGACCGCGACC
* * * *
92709 TTCGGTATTTTAACAG-TTCGCTCGATTTAAGATCGTGACT
1 TTC-AT-TTTTAA-AGCTTCGCTCGATTTAAGACCGCGACC
92749 TTCATTTTTAAAGCTT-GCTCGATTTAAGA
1 TTCATTTTTAAAGCTTCGCTCGATTTAAGA
92778 TTGCAACCTT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
37 18 0.31
38 9 0.16
39 7 0.12
40 24 0.41
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (38 bp):
TTCATTTTTAAAGCTTCGCTCGATTTAAGACCGCGACC
Found at i:93012 original size:38 final size:38
Alignment explanation
Indices: 92886--93398 Score: 140
Period size: 40 Copynumber: 13.3 Consensus size: 38
92876 CATTTCGATT
* *
92886 GATTTAAGATCGTGACTGTCATTTCTTATGGCTCTCTC
1 GATTTAAGATCGCGACTGTCATTTCTTACGGCTCTCTC
* * * * * *
92924 GATTTAAGATCACGAGCT-TCGGTATTCTAACAG-TTTGCGC
1 GATTTAAGATCGCGA-CTGTC-AT-TTCTTACGGCTCT-CTC
*
92964 GATTTAAGATCGCGACTGTCATTTTTTACGGCTCTCTC
1 GATTTAAGATCGCGACTGTCATTTCTTACGGCTCTCTC
* * ** * * * *
93002 GATTTAAGATCGTGAGCTTTGGTATTCTAACAGTTCGCTC
1 GATTTAAGATCGCGA-CTGTCAT-TTCTTACGGCTCTCTC
* * * *
93042 AATTTAAGATCGTGACTGTCATTT-TTAAGGCTCTATC
1 GATTTAAGATCGCGACTGTCATTTCTTACGGCTCTCTC
* * * * *
93079 -AGTTTAAGATCGCAAACT-TTAGTATTCTAACAG-TTTGCTC
1 GA-TTTAAGATCGC-GACTGTCA-T-TTCTTACGGCTCT-CTC
* * * *
93119 GATTTAAGATCGCGGCTCTCAGTT-TTAAGGCT-TGCTC
1 GATTTAAGATCGCGACTGTCATTTCTTACGGCTCT-CTC
* * * * * * * *
93156 AATTTAAGATTGCGACTTTTGATTTCTAACAG-TTTGTTC
1 GATTTAAGATCGCGAC-TGTCATTTCTTACGGCTCT-CTC
* * * *
93195 AATTTAAGATCGTGATTGTCATTT-TTAAGGCT-TGCTC
1 GATTTAAGATCGCGACTGTCATTTCTTACGGCTCT-CTC
* * ** *** *
93232 GATTTAAGATCGCAACAT-TCAGTACTCCAACAATTCACTC
1 GATTTAAGATCGCGAC-TGTCA-T-TTCTTACGGCTCTCTC
* * * *
93272 GATTTAAGGTCGCGACTGTCATTT-TTAAGGCTCACTT
1 GATTTAAGATCGCGACTGTCATTTCTTACGGCTCTCTC
* * *** *
93309 GATTGAAGATCGCGACCT-TCAGTATTCTAACAATTCGCTC
1 GATTTAAGATCGCGA-CTGTCA-T-TTCTTACGGCTCTCTC
* * *
93349 GATTTAAGATCGCGACTATCATTT-TTAAGG-TTTGCTC
1 GATTTAAGATCGCGACTGTCATTTCTTACGGCTCT-CTC
*
93386 GATTTTAGATCGC
1 GATTTAAGATCGC
93399 AACTATCTTT
Statistics
Matches: 335, Mismatches: 107, Indels: 67
0.66 0.21 0.13
Matches are distributed among these distances:
36 2 0.01
37 101 0.30
38 67 0.20
39 52 0.16
40 112 0.33
41 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (38 bp):
GATTTAAGATCGCGACTGTCATTTCTTACGGCTCTCTC
Found at i:93299 original size:230 final size:231
Alignment explanation
Indices: 92637--93395 Score: 576
Period size: 230 Copynumber: 3.3 Consensus size: 231
92627 CGACTTTCGA
* * * ** * * * * * *
92637 TATTCTAATAGTTCACTCGATTTAAGATCATGATTTTCATTTTTAAGGCTCGCTCGATTTAAGAC
1 TATTCTAACAATTCGCTCGATTTAAGATCGCGACTATCAGTTTTAAGGCTTGCTCAATTTAAGAT
* ** * * * * * *
92702 CGCGACCTTCGGTATTT-TAACAGTTCGCTCGATTTAAGATCGTGACTTTCA-TTTTTAAAGCT-
66 TGCGA-CTTTTG-ATTTCTAACAGTTTGCGCAATTTAAGATCGCGACTGTCATTTTTTAAGGCTC
* * * * ** **
92764 TGCTCGATTTAAGATTG-CAACCTT-TGTTATTCTAACAATTTGCTCAAGTTT-AGATTACGACT
129 T-CTCGATTTAAGATCGTCAA-CTTCAG-TACTCCAACAATTCACTCAA-TTTAAGATCGCGACT
* * * ** *
92826 ATCA-TTTTAAGGCTCACTTTGATTTAAGATCGTGACCTTC-G
190 GTCATTTTTAAGGCTCAC-TAGATTGAAGATCGCAAACTTCAG
* * * * * * * * *
92867 ATGTTCTAACATTTCGATTGATTTAAGATCGTGACTGTCATTTCTTATGGCTCT-CTCGATTTAA
1 -TATTCTAACAATTCGCTCGATTTAAGATCGCGACTATCAGTT-TTAAGGCT-TGCTCAATTTAA
** * * * *
92931 GATCACGAGC-TTCGGTATTCTAACAGTTTGCGCGATTTAAGATCGCGACTGTCATTTTTTACGG
63 GATTGCGA-CTTTTGAT-TTCTAACAGTTTGCGCAATTTAAGATCGCGACTGTCATTTTTTAAGG
* * ** * * * * *
92995 CTCTCTCGATTTAAGATCGTGAGCTTTGGTATTCTAACAGTTCGCTCAATTTAAGATCGTGACTG
126 CTCTCTCGATTTAAGATCGTCAACTTCAGTACTCCAACAATTCACTCAATTTAAGATCGCGACTG
* *
93060 TCATTTTTAAGGCTCTA-TCAG-TTTAAGATCGCAAACTTTAG
191 TCATTTTTAAGGCTC-ACT-AGATTGAAGATCGCAAACTTCAG
* * * *
93101 TATTCTAACAGTTTGCTCGATTTAAGATCGCGGCTCTCAGTTTTAAGGCTTGCTCAATTTAAGAT
1 TATTCTAACAATTCGCTCGATTTAAGATCGCGACTATCAGTTTTAAGGCTTGCTCAATTTAAGAT
** * *
93166 TGCGACTTTTGATTTCTAACAGTTTGTTCAATTTAAGATCGTGATTGTCA-TTTTTAAGGCT-TG
66 TGCGACTTTTGATTTCTAACAGTTTGCGCAATTTAAGATCGCGACTGTCATTTTTTAAGGCTCT-
* *
93229 CTCGATTTAAGATCG-CAACATTCAGTACTCCAACAATTCACTCGATTTAAGGTCGCGACTGTCA
130 CTCGATTTAAGATCGTCAAC-TTCAGTACTCCAACAATTCACTCAATTTAAGATCGCGACTGTCA
* * *
93293 TTTTTAAGGCTCACTTGATTGAAGATCGCGACCTTCAG
194 TTTTTAAGGCTCACTAGATTGAAGATCGCAAACTTCAG
* * * *
93331 TATTCTAACAATTCGCTCGATTTAAGATCGCGACTATCATTTTTAAGGTTTGCTCGATTTTAGAT
1 TATTCTAACAATTCGCTCGATTTAAGATCGCGACTATCAGTTTTAAGGCTTGCTCAATTTAAGAT
93396 CGCAACTATC
Statistics
Matches: 426, Mismatches: 83, Indels: 39
0.78 0.15 0.07
Matches are distributed among these distances:
229 5 0.01
230 147 0.35
231 71 0.17
232 83 0.19
233 103 0.24
234 16 0.04
235 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (231 bp):
TATTCTAACAATTCGCTCGATTTAAGATCGCGACTATCAGTTTTAAGGCTTGCTCAATTTAAGAT
TGCGACTTTTGATTTCTAACAGTTTGCGCAATTTAAGATCGCGACTGTCATTTTTTAAGGCTCTC
TCGATTTAAGATCGTCAACTTCAGTACTCCAACAATTCACTCAATTTAAGATCGCGACTGTCATT
TTTAAGGCTCACTAGATTGAAGATCGCAAACTTCAG
Found at i:93396 original size:77 final size:77
Alignment explanation
Indices: 92410--93398 Score: 779
Period size: 77 Copynumber: 12.9 Consensus size: 77
92400 ACATTTGATG
* * * * * * *
92410 TTCTAACATTTCACTCGATTTAAGATCACGATTTTCATTTTTTATGGCTCT-CTCGATTTAAGTT
1 TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCA-TTTTTAAGGCT-TGCTCGATTTAAGAT
* * *
92474 TGTGAACTTCAGTA
64 CGCGACCTTCAGTA
* * * * *
92488 TTCTAATAGTTTGCTCGATTTAAGATCGCGACTTTCATTTTTAAGGCTTGCTCAATTTAAGATCA
1 TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTTTTAAGGCTTGCTCGATTTAAGATCG
* *
92553 TG--GTT--GTAA
66 CGACCTTCAGT-A
* * * * * * ** *
92562 TTTTTAA-GGTTCGCTCGATTTAAGATCGCAATTGTCATTTTTAAGGATCGGACGATTTAAGATT
1 -TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTTTTAAGGCTTGCTCGATTTAAGATC
* *
92626 ACGACTTTC-GATA
65 GCGACCTTCAG-TA
* * ** * * * *
92639 TTCTAATAGTTCACTCGATTTAAGATCATGATTTTCATTTTTAAGGCTCGCTCGATTTAAGACCG
1 TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTTTTAAGGCTTGCTCGATTTAAGATCG
*
92704 CGACCTTCGGTA
66 CGACCTTCAGTA
* * * * *
92716 TTTTAACAGTTCGCTCGATTTAAGATCGTGACTTTCATTTTTAAAGCTTGCTCGATTTAAGATTG
1 TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTTTTAAGGCTTGCTCGATTTAAGATCG
* *
92781 CAACCTT-TGTTA
66 CGACCTTCAG-TA
* * * ** * ** *
92793 TTCTAACAATTTGCTCAAGTTT-AGATTACGACTATCA-TTTTAAGGCTCACTTTGATTTAAGAT
1 TTCTAACAGTTCGCTCGA-TTTAAGATCGCGACTGTCATTTTTAAGGCTTGC-TCGATTTAAGAT
* *
92856 CGTGACCTTC-GATG
64 CGCGACCTTCAG-TA
* * * * *
92870 TTCTAACATTTCGATTGATTTAAGATCGTGACTGTCATTTCTTATGGCTCT-CTCGATTTAAGAT
1 TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTT-TTAAGGCT-TGCTCGATTTAAGAT
* * *
92934 CACGAGCTTCGGTA
64 CGCGACCTTCAGTA
* * *
92948 TTCTAACAGTTTGCGCGATTTAAGATCGCGACTGTCATTTTTTACGGCTCT-CTCGATTTAAGAT
1 TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCA-TTTTTAAGGCT-TGCTCGATTTAAGAT
* * **
93012 CGTGAGCTTTGGTA
64 CGCGACCTTCAGTA
* * *
93026 TTCTAACAGTTCGCTCAATTTAAGATCGTGACTGTCATTTTTAAGGCTCT-ATC-AGTTTAAGAT
1 TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTTTTAAGGCT-TGCTCGA-TTTAAGAT
* * *
93089 CGCAAACTTTAGTA
64 CGCGACCTTCAGTA
* * * * * *
93103 TTCTAACAGTTTGCTCGATTTAAGATCGCGGCTCTCAGTTTTAAGGCTTGCTCAATTTAAGATTG
1 TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTTTTAAGGCTTGCTCGATTTAAGATCG
**
93168 CGA-CTTTTG-A
66 CGACCTTCAGTA
* * * * *
93178 TTTCTAACAGTTTGTTCAATTTAAGATCGTGATTGTCATTTTTAAGGCTTGCTCGATTTAAGATC
1 -TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTTTTAAGGCTTGCTCGATTTAAGATC
* *
93243 GCAACATTCAGTA
65 GCGACCTTCAGTA
* * * * * ** * *
93256 CTCCAACAATTCACTCGATTTAAGGTCGCGACTGTCATTTTTAAGGCTCACTTGATTGAAGATCG
1 TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTTTTAAGGCTTGCTCGATTTAAGATCG
93321 CGACCTTCAGTA
66 CGACCTTCAGTA
* * * *
93333 TTCTAACAATTCGCTCGATTTAAGATCGCGACTATCATTTTTAAGGTTTGCTCGATTTTAGATCG
1 TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTTTTAAGGCTTGCTCGATTTAAGATCG
93398 C
66 C
93399 AACTATCTTT
Statistics
Matches: 732, Mismatches: 154, Indels: 51
0.78 0.16 0.05
Matches are distributed among these distances:
73 2 0.00
74 49 0.07
75 8 0.01
76 87 0.12
77 418 0.57
78 156 0.21
79 12 0.02
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.39
Consensus pattern (77 bp):
TTCTAACAGTTCGCTCGATTTAAGATCGCGACTGTCATTTTTAAGGCTTGCTCGATTTAAGATCG
CGACCTTCAGTA
Found at i:93956 original size:44 final size:46
Alignment explanation
Indices: 93862--93956 Score: 124
Period size: 44 Copynumber: 2.1 Consensus size: 46
93852 ATAAAGCTGT
* * *
93862 AATGGAATAGGGCTGTGATCAGTAATTCAGTTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCAGTTGTTTGGTTGAATGC
*
93908 AATGGAATAGAGCTGTAAT-AGT-ATTC-TTGTGTTTGGTTGAATGC
1 AATGGAATAGAGCTGTAATCAGTAATTCAGT-TGTTTGGTTGAATGC
93952 AATGG
1 AATGG
93957 TGCTGTAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 23 0.52
45 3 0.07
46 17 0.39
ACGTcount: A:0.27, C:0.06, G:0.31, T:0.36
Consensus pattern (46 bp):
AATGGAATAGAGCTGTAATCAGTAATTCAGTTGTTTGGTTGAATGC
Found at i:94162 original size:57 final size:58
Alignment explanation
Indices: 94057--94201 Score: 188
Period size: 57 Copynumber: 2.5 Consensus size: 58
94047 ATAAGATTGC
* *
94057 TATTAAATATAATTTAATAAAAATAATAAATAATTTAATTATATTTTAACATAATTAT
1 TATTAAATATAATTTAATAAAAATAATAAATAATTTAATAACATTTTAACATAATTAT
* *
94115 TATTAAATA-AATTTAAT-AAAATAATATATAATTTAATAACATTTTTAATATAATTAT
1 TATTAAATATAATTTAATAAAAATAATAAATAATTTAATAACA-TTTTAACATAATTAT
* *
94172 TATTAAAATATGAA-TTAGTAAAAATCATAA
1 TATT-AAATAT-AATTTAATAAAAATAATAA
94202 TATATAATAT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
56 21 0.28
57 26 0.35
58 14 0.19
59 4 0.05
60 10 0.13
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (58 bp):
TATTAAATATAATTTAATAAAAATAATAAATAATTTAATAACATTTTAACATAATTAT
Found at i:97197 original size:26 final size:29
Alignment explanation
Indices: 97156--97221 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
97146 CTAGTAATTA
* *
97156 AAAAAAATCATATAAATGTAAA-A-TATAT
1 AAAAAAAT-ATATAAAAGTAAAGACTAAAT
97184 AAAAAAATAT-TAAAAGTAAAGACTAAAT
1 AAAAAAATATATAAAAGTAAAGACTAAAT
97212 AAAAAAATAT
1 AAAAAAATAT
97222 CAAAATTGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 9 0.26
27 3 0.09
28 22 0.65
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (29 bp):
AAAAAAATATATAAAAGTAAAGACTAAAT
Found at i:98797 original size:13 final size:14
Alignment explanation
Indices: 98779--98807 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98769 AAAAAATAGG
98779 GGGAAG-AGAAAGA
1 GGGAAGAAGAAAGA
98792 GGGAAGAAGAAAGA
1 GGGAAGAAGAAAGA
98806 GG
1 GG
98808 AAATAATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (14 bp):
GGGAAGAAGAAAGA
Found at i:99302 original size:23 final size:23
Alignment explanation
Indices: 99269--99312 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
99259 TTAGAGGCGG
*
99269 CACCAATGGTGCCTTGTTGAGAA
1 CACCAAAGGTGCCTTGTTGAGAA
99292 CACCAAAGGTGCCTTGTTGAG
1 CACCAAAGGTGCCTTGTTGAG
99313 TGGCGGAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (23 bp):
CACCAAAGGTGCCTTGTTGAGAA
Found at i:99508 original size:27 final size:28
Alignment explanation
Indices: 99477--99540 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 28
99467 TGTTGTCTTT
*
99477 AATTTATTTTAAA-ATTATTTTATTTTA
1 AATTTATTTTAAAGATTAATTTATTTTA
* *
99504 AATTT-TTATAAAGTTTAATTTATTTTA
1 AATTTATTTTAAAGATTAATTTATTTTA
*
99531 ATGTTTATTT
1 A-ATTTATTT
99541 GTTATAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
26 6 0.21
27 18 0.62
28 3 0.10
29 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (28 bp):
AATTTATTTTAAAGATTAATTTATTTTA
Found at i:101024 original size:13 final size:12
Alignment explanation
Indices: 101006--101042 Score: 58
Period size: 11 Copynumber: 3.1 Consensus size: 12
100996 TTTGTTATTT
101006 TATAATATAAAAA
1 TATAATA-AAAAA
101019 TATAATAAAAAA
1 TATAATAAAAAA
101031 -ATAATAAAAAA
1 TATAATAAAAAA
101042 T
1 T
101043 TCAGGCATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.48
12 5 0.22
13 7 0.30
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
TATAATAAAAAA
Found at i:102331 original size:62 final size:59
Alignment explanation
Indices: 102221--102337 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 59
102211 TAAACTTTAA
* * * *
102221 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAGTTTAATATTAAATCT
1 TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
* *
102280 TATTAAATTAATCGAATATTTATCTATAAGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAATTAATAGAATACTTATC---AAGATAAACATTAAATTAAATTTAATATTAA
102338 GATAATCACT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 21 0.43
62 28 0.57
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (59 bp):
TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:102955 original size:19 final size:20
Alignment explanation
Indices: 102931--102972 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
102921 TAGATGCAAC
* *
102931 TTTT-AATATTATATTTTTG
1 TTTTAAATATTAGATTTGTG
102950 TTTTAAATATTAGATTTGTG
1 TTTTAAATATTAGATTTGTG
102970 TTT
1 TTT
102973 AAGGTTTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (20 bp):
TTTTAAATATTAGATTTGTG
Found at i:106892 original size:20 final size:20
Alignment explanation
Indices: 106864--106901 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
106854 GAGTTTCTCG
*
106864 AAAATGTCAACGATCAACGA
1 AAAAAGTCAACGATCAACGA
*
106884 AAAAAGTCAACGGTCAAC
1 AAAAAGTCAACGATCAAC
106902 AGGTCAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
AAAAAGTCAACGATCAACGA
Found at i:108454 original size:5 final size:5
Alignment explanation
Indices: 108440--108471 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
108430 AAGTTTGCCC
108440 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
108472 TTACACAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:108797 original size:3 final size:3
Alignment explanation
Indices: 108791--108843 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
108781 TCCACAAGTT
* *
108791 TTA TTA TGA TTA TGA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
108839 TTA TT
1 TTA TT
108844 TTCACTACTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:125860 original size:21 final size:20
Alignment explanation
Indices: 125820--125868 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
125810 GTGGATTTTA
* **
125820 ATTTTGGACTTTGGTTTTTG
1 ATTTGGGACTTTGGAGTTTG
*
125840 GTATTGGGACTTTGGAGTTTG
1 AT-TTGGGACTTTGGAGTTTG
125861 ATTTGGGA
1 ATTTGGGA
125869 TTTTTTCTGC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.14, C:0.04, G:0.33, T:0.49
Consensus pattern (20 bp):
ATTTGGGACTTTGGAGTTTG
Found at i:128832 original size:37 final size:38
Alignment explanation
Indices: 128754--128843 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 38
128744 CGCCACTTCA
* *
128754 TCCACCCTACACACCATAATTGGACTATGGTAGGCCCG
1 TCCACCCTACACACCATAACTGGACTATGGTAGGCCAG
* *
128792 TCCACCCTGCACACCAT-ACTGGGCTATGGTAGGCCAG
1 TCCACCCTACACACCATAACTGGACTATGGTAGGCCAG
* *
128829 TCCATCTTACACACC
1 TCCACCCTACACACC
128844 GTGTTAGTGG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
37 29 0.64
38 16 0.36
ACGTcount: A:0.24, C:0.37, G:0.18, T:0.21
Consensus pattern (38 bp):
TCCACCCTACACACCATAACTGGACTATGGTAGGCCAG
Found at i:130084 original size:88 final size:88
Alignment explanation
Indices: 129926--130106 Score: 281
Period size: 88 Copynumber: 2.1 Consensus size: 88
129916 CCAGATCTCG
* * * * *
129926 AATTGATTGAAAATGTGAAAGAGCAGTTGAATCTCCAATGAATCAAGAATCGAAAATGGTTTCAA
1 AATTAATTAAAAATGCGAAAGAGCAGTCGAACCTCCAATGAATCAAGAATCGAAAATGGTTTCAA
*
129991 AATAATGAAGACTAACACGCCCA
66 AATAATGAAGACTAACACACCCA
*
130014 AATTAATTAAAAATGCGAAAGAGCAGTCGAACCTCCAATGAATCAAGAATCGATAATGGTTTCAA
1 AATTAATTAAAAATGCGAAAGAGCAGTCGAACCTCCAATGAATCAAGAATCGAAAATGGTTTCAA
* *
130079 AATAATGAAGACTGACACACCCG
66 AATAATGAAGACTAACACACCCA
130102 AATTA
1 AATTA
130107 CAAGGAGTTA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.45, C:0.16, G:0.17, T:0.22
Consensus pattern (88 bp):
AATTAATTAAAAATGCGAAAGAGCAGTCGAACCTCCAATGAATCAAGAATCGAAAATGGTTTCAA
AATAATGAAGACTAACACACCCA
Found at i:131897 original size:11 final size:11
Alignment explanation
Indices: 131878--131934 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
131868 CCATTAGTTA
*
131878 ATCGTACCACC
1 ATCGGACCACC
131889 ATCGGACCACC
1 ATCGGACCACC
* *
131900 GTCGTACCACC
1 ATCGGACCACC
* * *
131911 GTCAGACCATC
1 ATCGGACCACC
131922 ATCGTGACCACC
1 ATCG-GACCACC
131934 A
1 A
131935 CCTCATTCTT
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
11 29 0.81
12 7 0.19
ACGTcount: A:0.26, C:0.42, G:0.16, T:0.16
Consensus pattern (11 bp):
ATCGGACCACC
Found at i:131906 original size:22 final size:22
Alignment explanation
Indices: 131878--131934 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
131868 CCATTAGTTA
*
131878 ATCGTACCACCATCGGACCACC
1 ATCGTACCACCATCAGACCACC
* * *
131900 GTCGTACCACCGTCAGACCATC
1 ATCGTACCACCATCAGACCACC
131922 ATCGTGACCACCA
1 ATCGT-ACCACCA
131935 CCTCATTCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 22 0.79
23 6 0.21
ACGTcount: A:0.26, C:0.42, G:0.16, T:0.16
Consensus pattern (22 bp):
ATCGTACCACCATCAGACCACC
Found at i:136132 original size:13 final size:13
Alignment explanation
Indices: 136114--136192 Score: 54
Period size: 13 Copynumber: 6.0 Consensus size: 13
136104 TCTATATTCC
136114 TATAAATATTTCA
1 TATAAATATTTCA
* *
136127 TATAAACACTTCA
1 TATAAATATTTCA
136140 TATATCAAT-TTTCA
1 TATA--AATATTTCA
* * *
136154 TAAAAACATTTCT
1 TATAAATATTTCA
*
136167 TATAACA-ATTTTA
1 TATAA-ATATTTCA
*
136180 TCTAAATATTTCA
1 TATAAATATTTCA
136193 CATGTGCTGT
Statistics
Matches: 49, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
12 3 0.06
13 36 0.73
14 8 0.16
15 2 0.04
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (13 bp):
TATAAATATTTCA
Found at i:136152 original size:27 final size:27
Alignment explanation
Indices: 136122--136178 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
136112 CCTATAAATA
* *
136122 TTTCATATAAACACTTCATATATCAAT
1 TTTCATAAAAACACTTCATATAACAAT
* *
136149 TTTCATAAAAACATTTCTTATAACAAT
1 TTTCATAAAAACACTTCATATAACAAT
136176 TTT
1 TTT
136179 ATCTAAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (27 bp):
TTTCATAAAAACACTTCATATAACAAT
Found at i:150825 original size:18 final size:18
Alignment explanation
Indices: 150801--150851 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
150791 TGAAAATCCT
150801 GAAGAAGAAGATCCTAAA
1 GAAGAAGAAGATCCTAAA
* * * * *
150819 GAGGAAGAGGATCTTGAG
1 GAAGAAGAAGATCCTAAA
150837 GAAGAAGAAGATCCT
1 GAAGAAGAAGATCCT
150852 GAAAAAGATC
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.45, C:0.10, G:0.31, T:0.14
Consensus pattern (18 bp):
GAAGAAGAAGATCCTAAA
Found at i:150859 original size:18 final size:18
Alignment explanation
Indices: 150802--150859 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
150792 GAAAATCCTG
150802 AAGAAGAAGATCCT-AAA
1 AAGAAGAAGATCCTGAAA
* * * **
150819 GAGGAAGAGGATCTTGAGG
1 -AAGAAGAAGATCCTGAAA
150838 AAGAAGAAGATCCTGAAA
1 AAGAAGAAGATCCTGAAA
150856 AAGA
1 AAGA
150860 TCTTTTGGAG
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.50, C:0.09, G:0.29, T:0.12
Consensus pattern (18 bp):
AAGAAGAAGATCCTGAAA
Found at i:155022 original size:28 final size:28
Alignment explanation
Indices: 154991--155049 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
154981 AAATCTGCCA
** *
154991 AATAAAAAATAATGTGATAGAGATCGCC
1 AATAAAAAATAATGCAATAAAGATCGCC
*
155019 AATAACAAATAATGCAATAAAGATCGCC
1 AATAAAAAATAATGCAATAAAGATCGCC
155047 AAT
1 AAT
155050 CCCTTAGGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.20
Consensus pattern (28 bp):
AATAAAAAATAATGCAATAAAGATCGCC
Found at i:155312 original size:43 final size:43
Alignment explanation
Indices: 155247--155407 Score: 182
Period size: 43 Copynumber: 3.7 Consensus size: 43
155237 TCTCAATCAA
*
155247 TCACATAC-TATCAATATGAGGAAACAATGTTTCATTCATTCGG
1 TCACATACAT-TCAATATTAGGAAACAATGTTTCATTCATTCGG
* * * * **
155290 TCACATACTTTCAATATTAGGAAACAATGTTCCACTCAATCAA
1 TCACATACATTCAATATTAGGAAACAATGTTTCATTCATTCGG
* * *
155333 TCACATACATTCAATATTAGAAAACAAT-TTTCCTCTCATTTGG
1 TCACATACATTCAATATTAGGAAACAATGTTTCAT-TCATTCGG
*
155376 TCACATACATTCAATATGTAGGAAACAGTGTT
1 TCACATACATTCAATAT-TAGGAAACAATGTT
155408 CCTCACAATG
Statistics
Matches: 97, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 3 0.03
43 82 0.85
44 10 0.10
45 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (43 bp):
TCACATACATTCAATATTAGGAAACAATGTTTCATTCATTCGG
Found at i:155338 original size:86 final size:87
Alignment explanation
Indices: 155238--155409 Score: 251
Period size: 86 Copynumber: 2.0 Consensus size: 87
155228 TTATCTTGCT
* *
155238 CTCAATCAATCACATAC-TATCAATATGAGGAAACAATGTTTCAT-TCATTCGGTCACATACTTT
1 CTCAATCAATCACATACAT-TCAATATGAGAAAACAAT-TTTCATCTCATTCGGTCACATACATT
155301 CAATAT-TAGGAAACAATGTTCCA
64 CAATATGTAGGAAACAATGTTCCA
* * *
155324 CTCAATCAATCACATACATTCAATATTAGAAAACAATTTTCCTCTCATTTGGTCACATACATTCA
1 CTCAATCAATCACATACATTCAATATGAGAAAACAATTTTCATCTCATTCGGTCACATACATTCA
*
155389 ATATGTAGGAAACAGTGTTCC
66 ATATGTAGGAAACAATGTTCC
155410 TCACAATGTC
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
85 5 0.06
86 56 0.73
87 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (87 bp):
CTCAATCAATCACATACATTCAATATGAGAAAACAATTTTCATCTCATTCGGTCACATACATTCA
ATATGTAGGAAACAATGTTCCA
Found at i:159188 original size:5 final size:5
Alignment explanation
Indices: 159178--159244 Score: 73
Period size: 5 Copynumber: 13.4 Consensus size: 5
159168 TGTTGTTTGG
* *
159178 AAGAA AAGAA AAGAA AAGAA ACGAA AAAAA AAGAA AAGAA ACA-AA AAGAA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA A-AGAA AAGAA
* * *
159228 ATGAA ATGAA ATGAA AA
1 AAGAA AAGAA AAGAA AA
159245 AAATATATCA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
4 1 0.02
5 52 0.96
6 1 0.02
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.04
Consensus pattern (5 bp):
AAGAA
Found at i:161110 original size:17 final size:18
Alignment explanation
Indices: 161084--161117 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
161074 AGAGTTTCGA
*
161084 AGAACTAAAA-GAAAAAG
1 AGAACAAAAATGAAAAAG
161101 AGAACAAAAATGAAAAA
1 AGAACAAAAATGAAAAA
161118 AACTGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.74, C:0.06, G:0.15, T:0.06
Consensus pattern (18 bp):
AGAACAAAAATGAAAAAG
Found at i:162661 original size:34 final size:33
Alignment explanation
Indices: 162617--162705 Score: 144
Period size: 34 Copynumber: 2.6 Consensus size: 33
162607 ATCAAATGAA
162617 TCTAAACAAGAGACATGCCAAATGGATAGCATAAG
1 TCTAAACAAGAGACATGCCAAATGGATAGCAT--G
162652 -CTAAACAAGAGACATGCCAAATGGATAGCATG
1 TCTAAACAAGAGACATGCCAAATGGATAGCATG
162684 TCTTAAACAAGAGACATGCCAA
1 TC-TAAACAAGAGACATGCCAA
162706 GGGAAAAGAG
Statistics
Matches: 52, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
32 1 0.02
33 1 0.02
34 50 0.96
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.17
Consensus pattern (33 bp):
TCTAAACAAGAGACATGCCAAATGGATAGCATG
Found at i:169372 original size:14 final size:14
Alignment explanation
Indices: 169353--169380 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
169343 TAGATAAGTT
169353 CACTTTTTGACTTG
1 CACTTTTTGACTTG
169367 CACTTTTTGACTTG
1 CACTTTTTGACTTG
169381 ACACAACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.50
Consensus pattern (14 bp):
CACTTTTTGACTTG
Found at i:175805 original size:92 final size:92
Alignment explanation
Indices: 175691--175882 Score: 255
Period size: 92 Copynumber: 2.1 Consensus size: 92
175681 TTAAGGGTGT
* * *
175691 AAAAAGCCCTCAAACTTTTTCAAAAAAGTAATTAAGTCCCTG-CTTT-TTTTTTTTTGCACTCAA
1 AAAAAGCCCTCAAACCTTTTCAAAAAAGCAATTAAGCCCCTGTCTTTATTTTTTTTTGCACTCAA
*
175754 TTAGGTAATTTAACT-TCCAAAATGAATC
66 TTAGGTAATTGAACTAT-C-AAATGAATC
*
175782 AAAAATGCCCTCAAACCTTTTCAAAAAAGCAATTAAGCCCCTGATTTTTTATTTTTTTTTGCACT
1 AAAAA-GCCCTCAAACCTTTTCAAAAAAGCAATTAAGCCCCTG--TCTTTATTTTTTTTTGCACT
* *
175847 CAATTAGGTACTTGAACTATCAAATGCATC
63 CAATTAGGTAATTGAACTATCAAATGAATC
175877 AAAAAG
1 AAAAAG
175883 GCCCATTGAT
Statistics
Matches: 88, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
91 5 0.06
92 34 0.39
94 1 0.01
95 16 0.18
96 31 0.35
97 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.35
Consensus pattern (92 bp):
AAAAAGCCCTCAAACCTTTTCAAAAAAGCAATTAAGCCCCTGTCTTTATTTTTTTTTGCACTCAA
TTAGGTAATTGAACTATCAAATGAATC
Found at i:177227 original size:15 final size:16
Alignment explanation
Indices: 177207--177243 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
177197 AAATTTTAAT
177207 ATAAAATATA-AA-AAA
1 ATAAAAT-TAGAACAAA
177222 ATAAAATTAGAACAAA
1 ATAAAATTAGAACAAA
177238 ATAAAA
1 ATAAAA
177244 AAATGTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 2 0.10
15 9 0.45
16 9 0.45
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
ATAAAATTAGAACAAA
Found at i:177256 original size:18 final size:18
Alignment explanation
Indices: 177235--177274 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
177225 AAATTAGAAC
177235 AAAAT-AAAAAAATGTATA
1 AAAATCAAAAAAAT-TATA
*
177253 AAAATCATAAAAATTATA
1 AAAATCAAAAAAATTATA
177271 AAAA
1 AAAA
177275 AATTGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (18 bp):
AAAATCAAAAAAATTATA
Found at i:177264 original size:19 final size:18
Alignment explanation
Indices: 177242--177302 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
177232 AACAAAATAA
177242 AAAAATGTATAAAAATCAT
1 AAAAAT-TATAAAAATCAT
*
177261 AAAAATTATAAAAA-AATT
1 AAAAATTATAAAAATCA-T
177279 GAAAAATTCTATAAAAATCAT
1 -AAAAA-T-TATAAAAATCAT
177300 AAA
1 AAA
177303 TGTATATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
17 1 0.03
18 9 0.26
19 11 0.31
20 4 0.11
21 9 0.26
22 1 0.03
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATTATAAAAATCAT
Found at i:177274 original size:30 final size:30
Alignment explanation
Indices: 177238--177302 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
177228 TTAGAACAAA
*
177238 ATAAAAAAA-TGTATAAAAATC-ATAAAAATT
1 ATAAAAAAATTG-A-AAAAATCTATAAAAATC
*
177268 ATAAAAAAATTGAAAAATTCTATAAAAATC
1 ATAAAAAAATTGAAAAAATCTATAAAAATC
177298 ATAAA
1 ATAAA
177303 TGTATATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 6 0.19
30 23 0.74
31 2 0.06
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (30 bp):
ATAAAAAAATTGAAAAAATCTATAAAAATC
Found at i:177310 original size:19 final size:18
Alignment explanation
Indices: 177249--177310 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 18
177239 TAAAAAAATG
177249 TATAAAAATCATAAAAATTA
1 TATAAAAATCAT--AAATTA
* * * *
177269 TAAAAAAATTGAAAAATTC
1 TATAAAAA-TCATAAATTA
177288 TATAAAAATCATAAATGTA
1 TATAAAAATCATAAAT-TA
177307 TATA
1 TATA
177311 TATATAATAC
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
18 6 0.19
19 17 0.53
20 7 0.22
21 2 0.06
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (18 bp):
TATAAAAATCATAAATTA
Found at i:177553 original size:38 final size:37
Alignment explanation
Indices: 177502--177595 Score: 104
Period size: 38 Copynumber: 2.5 Consensus size: 37
177492 TTAATATGAT
* *
177502 ATTTTTTATAATTTTTTATGAACTTTATAT-TTCTTTAC
1 ATTTTTTATAATTTTTTATG-ACTATAAATATT-TTTAC
*
177540 ATTTTTTATAATTTTCTTAAGACTATAAATATTTTTAC
1 ATTTTTTATAATTTT-TTATGACTATAAATATTTTTAC
177578 -TTTTTTAT-ATGTTTTTAT
1 ATTTTTTATAAT-TTTTTAT
177596 ATATTTACTA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
36 5 0.10
37 11 0.22
38 27 0.55
39 6 0.12
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.63
Consensus pattern (37 bp):
ATTTTTTATAATTTTTTATGACTATAAATATTTTTAC
Found at i:177625 original size:26 final size:28
Alignment explanation
Indices: 177591--177642 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
177581 TTTATATGTT
177591 TTTATATA-TTTACTAA-TTTTATTAAAA
1 TTTATATATTTTA-TAACTTTTATTAAAA
177618 TTTA-ATATTTTATAACTTTTATTAA
1 TTTATATATTTTATAACTTTTATTAA
177643 TTTTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (28 bp):
TTTATATATTTTATAACTTTTATTAAAA
Found at i:177648 original size:27 final size:27
Alignment explanation
Indices: 177567--177656 Score: 73
Period size: 27 Copynumber: 3.4 Consensus size: 27
177557 TAAGACTATA
177567 AATATTTT-T-ACTTTT-TTATATGTTTT
1 AATATTTTATAACTTTTATTA-AT-TTTT
* **
177593 TATATATTTACTAA-TTTTATTAAAATTT
1 AATAT-TTTA-TAACTTTTATTAATTTTT
177621 AATATTTTATAACTTTTATTAATTTTT
1 AATATTTTATAACTTTTATTAATTTTT
*
177648 -ATTTTTTAT
1 AATATTTTAT
177657 CATTTTTTGT
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
26 15 0.29
27 19 0.37
28 7 0.14
29 6 0.12
30 4 0.08
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (27 bp):
AATATTTTATAACTTTTATTAATTTTT
Found at i:177809 original size:20 final size:20
Alignment explanation
Indices: 177784--177836 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
177774 TTAAACCTAT
*
177784 AATATATAATAACATATCTA
1 AATATATAACAACATATCTA
** *
177804 AATATATAACAATGTATCTG
1 AATATATAACAACATATCTA
177824 AATATATAACAAC
1 AATATATAACAAC
177837 TACTAAAACC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.32
Consensus pattern (20 bp):
AATATATAACAACATATCTA
Found at i:180782 original size:15 final size:15
Alignment explanation
Indices: 180762--180790 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
180752 CTCTTAAAGG
180762 ATTGTATTCCACACT
1 ATTGTATTCCACACT
180777 ATTGTATTCCACAC
1 ATTGTATTCCACAC
180791 GTTAAAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38
Consensus pattern (15 bp):
ATTGTATTCCACACT
Found at i:180968 original size:21 final size:21
Alignment explanation
Indices: 180944--180991 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
180934 TTGTATCGAT
*
180944 ACAAGTGACAATTCTACTGAA
1 ACAAGTGACAACTCTACTGAA
* ** *
180965 ACAATTGACTCCTCTACTGAT
1 ACAAGTGACAACTCTACTGAA
180986 ACAAGT
1 ACAAGT
180992 CTTACCTCTA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (21 bp):
ACAAGTGACAACTCTACTGAA
Found at i:190759 original size:18 final size:18
Alignment explanation
Indices: 190736--190772 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
190726 ACAATTCATA
190736 TCACTTTCAATTCCAATT
1 TCACTTTCAATTCCAATT
* *
190754 TCACTTTCACTTTCAATT
1 TCACTTTCAATTCCAATT
190772 T
1 T
190773 TGATCATCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (18 bp):
TCACTTTCAATTCCAATT
Found at i:191103 original size:17 final size:18
Alignment explanation
Indices: 191069--191104 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
191059 TGAATTTTTA
191069 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
191087 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
191104 T
1 T
191105 AACTCGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:199840 original size:85 final size:85
Alignment explanation
Indices: 199697--199863 Score: 334
Period size: 85 Copynumber: 2.0 Consensus size: 85
199687 ATAAGGTTTA
199697 ACCTTACAATCTCTCTTATGACTTATACCCCAAAATCTTAAGAGAGAACTACCTTAAGGTTTCTA
1 ACCTTACAATCTCTCTTATGACTTATACCCCAAAATCTTAAGAGAGAACTACCTTAAGGTTTCTA
199762 CCCAAACCTTAAGTTTAAAC
66 CCCAAACCTTAAGTTTAAAC
199782 ACCTTACAATCTCTCTTATGACTTATACCCCAAAATCTTAAGAGAGAACTACCTTAAGGTTTCTA
1 ACCTTACAATCTCTCTTATGACTTATACCCCAAAATCTTAAGAGAGAACTACCTTAAGGTTTCTA
199847 CCCAAACCTTAAGTTTA
66 CCCAAACCTTAAGTTTA
199864 GACCCTCTCT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 82 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (85 bp):
ACCTTACAATCTCTCTTATGACTTATACCCCAAAATCTTAAGAGAGAACTACCTTAAGGTTTCTA
CCCAAACCTTAAGTTTAAAC
Found at i:200622 original size:12 final size:12
Alignment explanation
Indices: 200607--200637 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
200597 CTTAGTCTAG
200607 TAGTTAGCATCT
1 TAGTTAGCATCT
200619 TAGTTAGCATCT
1 TAGTTAGCATCT
200631 TAGTTAG
1 TAGTTAG
200638 GATCATATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (12 bp):
TAGTTAGCATCT
Found at i:203899 original size:21 final size:21
Alignment explanation
Indices: 203875--203920 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
203865 TGCTTGCTAG
203875 TTATATGTTATGCGGACTCTT
1 TTATATGTTATGCGGACTCTT
203896 TTATATGTTATGCGGACTCTT
1 TTATATGTTATGCGGACTCTT
203917 TTAT
1 TTAT
203921 GTGATGTGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.20, C:0.13, G:0.17, T:0.50
Consensus pattern (21 bp):
TTATATGTTATGCGGACTCTT
Found at i:204819 original size:29 final size:29
Alignment explanation
Indices: 204787--204858 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 29
204777 ATCTGTAATC
204787 TGTTTATGTGAGAACTATAACATGCAAAT
1 TGTTTATGTGAGAACTATAACATGCAAAT
* * *** **
204816 TGTTTATGTGTGAATTATTGTATGTGAAT
1 TGTTTATGTGAGAACTATAACATGCAAAT
204845 TGTTTATGTGAGAA
1 TGTTTATGTGAGAA
204859 TTGCTATTTG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.04, G:0.22, T:0.43
Consensus pattern (29 bp):
TGTTTATGTGAGAACTATAACATGCAAAT
Found at i:204861 original size:15 final size:14
Alignment explanation
Indices: 204813--204861 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
204803 ATAACATGCA
204813 AATTGTTTATGTGTG
1 AATTGTTTATGTG-G
*
204828 AATTATTGTATGT-G
1 AATTGTT-TATGTGG
204842 AATTGTTTATGTGAG
1 AATTGTTTATGTG-G
204857 AATTG
1 AATTG
204862 CTATTTGCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
13 5 0.17
14 7 0.24
15 12 0.41
16 5 0.17
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (14 bp):
AATTGTTTATGTGG
Found at i:210875 original size:73 final size:73
Alignment explanation
Indices: 210756--210902 Score: 278
Period size: 73 Copynumber: 2.0 Consensus size: 73
210746 AATAGAAAAC
210756 TGATAAAAATTTATAATGAAACTTATGAGCCAAAAATCGAAAACAAAATTTTCATCAAAAGATAA
1 TGATAAAAATTTATAATGAAACTTATGAGCCAAAAATCGAAAACAAAATTTTCATCAAAAGATAA
210821 AATATAAT
66 AATATAAT
210829 TGATAAAAAATTT-TAATGAAACTTATGAGCCAAAAATCGAAAACAAAATTTTCATCAAAAGATA
1 TGAT-AAAAATTTATAATGAAACTTATGAGCCAAAAATCGAAAACAAAATTTTCATCAAAAGATA
210893 AAATATAAT
65 AAATATAAT
210902 T
1 T
210903 AGTATAATTA
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
73 65 0.89
74 8 0.11
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.28
Consensus pattern (73 bp):
TGATAAAAATTTATAATGAAACTTATGAGCCAAAAATCGAAAACAAAATTTTCATCAAAAGATAA
AATATAAT
Found at i:211271 original size:9 final size:9
Alignment explanation
Indices: 211257--211295 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
211247 ATTTATTTTT
211257 TTAATTAAA
1 TTAATTAAA
211266 TTAATT-AA
1 TTAATTAAA
*
211274 TTAACTAAA
1 TTAATTAAA
*
211283 CTAATTAAA
1 TTAATTAAA
211292 TTAA
1 TTAA
211296 CCTAATTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
8 7 0.28
9 18 0.72
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (9 bp):
TTAATTAAA
Found at i:211275 original size:13 final size:13
Alignment explanation
Indices: 211257--211295 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
211247 ATTTATTTTT
211257 TTAATTAAATTAA
1 TTAATTAAATTAA
* *
211270 TTAATTAACTAAA
1 TTAATTAAATTAA
*
211283 CTAATTAAATTAA
1 TTAATTAAATTAA
211296 CCTAATTATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (13 bp):
TTAATTAAATTAA
Found at i:212228 original size:31 final size:30
Alignment explanation
Indices: 212193--212291 Score: 80
Period size: 31 Copynumber: 3.4 Consensus size: 30
212183 AGAGTGAACG
212193 AAATAAAAACAATCTAAAACGTGAGTGACTA
1 AAATAAAAA-AATCTAAAACGTGAGTGACTA
* * *
212224 AAAT--AGAAAT-T-ATATGTGAGTGACTA
1 AAATAAAAAAATCTAAAACGTGAGTGACTA
* * * *
212250 AAATAAAAATTATCTAAAACATTAGTGTCTA
1 AAATAAAAA-AATCTAAAACGTGAGTGACTA
*
212281 AATTAAAAAAA
1 AAATAAAAAAA
212292 ATCATAGTTG
Statistics
Matches: 51, Mismatches: 12, Indels: 11
0.69 0.16 0.15
Matches are distributed among these distances:
26 17 0.33
27 1 0.02
28 5 0.10
29 4 0.08
30 2 0.04
31 22 0.43
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (30 bp):
AAATAAAAAAATCTAAAACGTGAGTGACTA
Found at i:212242 original size:26 final size:26
Alignment explanation
Indices: 212213--212262 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
212203 AATCTAAAAC
*
212213 GTGAGTGACTAAAATAGAAATTATAT
1 GTGAGTGACTAAAATAAAAATTATAT
212239 GTGAGTGACTAAAATAAAAATTAT
1 GTGAGTGACTAAAATAAAAATTAT
212263 CTAAAACATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.18, T:0.30
Consensus pattern (26 bp):
GTGAGTGACTAAAATAAAAATTATAT
Found at i:216518 original size:16 final size:16
Alignment explanation
Indices: 216499--216530 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
216489 TACATGTGGA
*
216499 AAATAATACATTAAAT
1 AAATAACACATTAAAT
216515 AAATAACACATTAAAT
1 AAATAACACATTAAAT
216531 TAAAAAATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (16 bp):
AAATAACACATTAAAT
Found at i:217802 original size:29 final size:29
Alignment explanation
Indices: 217770--217829 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
217760 TTAAATAAGT
217770 AATAAT-AAAATTACATTTTAATTCTTTAA
1 AATAATAAAAATTACA-TTTAATTCTTTAA
**
217799 AATAATAAAAATTTGATTTAATTCTTTAA
1 AATAATAAAAATTACATTTAATTCTTTAA
217828 AA
1 AA
217830 ATTATAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 21 0.75
30 7 0.25
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (29 bp):
AATAATAAAAATTACATTTAATTCTTTAA
Found at i:219745 original size:123 final size:123
Alignment explanation
Indices: 219576--219803 Score: 282
Period size: 123 Copynumber: 1.9 Consensus size: 123
219566 AAAAAATTTG
* * * ** ** *
219576 GTGTTGGCCATGCAATGGTCGACACTCCTTTTTTGTCAGATTAAAAAATTATTTTTTTTTGTATT
1 GTGTTGGCCATGCAATGGCCAACACTCCTTTTTTGTCAAACAAAAAAATTA-AATTTTTGGTATT
*
219641 GGCTATGT-CATGGTCGAC-ACCCCTATTTATCTGATAAAAAAAATTTAATTTCTTTTTA
65 GGCCAT-TACATGGTCGACAACCCCTATTTATCTGATAAAAAAAATTTAATTTCTTTTTA
* * *
219699 GTGTTGGTCATGCAATGGCCAACAC-CCTCTTTTTGTCAAACAAAAAATTTAAATTTTTGGTGTT
1 GTGTTGGCCATGCAATGGCCAACACTCCT-TTTTTGTCAAACAAAAAAATTAAATTTTTGGTATT
* *
219763 GGCCATTACATGGTCGACAACCCCTTTTTATCTGGTAAAAA
65 GGCCATTACATGGTCGACAACCCCTATTTATCTGATAAAAA
219804 TCAATTTTTT
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
121 1 0.01
122 27 0.31
123 60 0.68
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (123 bp):
GTGTTGGCCATGCAATGGCCAACACTCCTTTTTTGTCAAACAAAAAAATTAAATTTTTGGTATTG
GCCATTACATGGTCGACAACCCCTATTTATCTGATAAAAAAAATTTAATTTCTTTTTA
Found at i:223848 original size:85 final size:85
Alignment explanation
Indices: 223727--224112 Score: 612
Period size: 85 Copynumber: 4.5 Consensus size: 85
223717 AATTTAACAT
** *
223727 TATTTAAATAAAAAAGATTATTATTATATTTTAATTTATATCAAATAATGTGTTGATTTGACAAT
1 TATTTAAATAAAAAA-ATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAAT
223792 ACATTATTTACCAAATTTTAA
65 ACATTATTTACCAAATTTTAA
*
223813 TATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTATTGATTTGACAATA
1 TATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAATA
*
223878 CATTATTTATCAAATTTTAA
66 CATTATTTACCAAATTTTAA
*
223898 TATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGATAATA
1 TATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAATA
* * *
223963 TATTTTTTATCAAATTTTAA
66 CATTATTTACCAAATTTTAA
* *
223983 TATTTTAATGAAAAAGATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAAT
1 TATTTAAAT-AAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAAT
224048 ACATTATTTACCAAATTTTAA
65 ACATTATTTACCAAATTTTAA
* * * *
224069 TATTTAAAT-TAAAAATTACTATTAGATTACAAGTTTTATCAAAT
1 TATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAAT
224113 TTTAAATTTA
Statistics
Matches: 278, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
84 30 0.11
85 154 0.55
86 94 0.34
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (85 bp):
TATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAATA
CATTATTTACCAAATTTTAA
Found at i:224236 original size:22 final size:23
Alignment explanation
Indices: 224201--224265 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 23
224191 GCATTGGACC
* *
224201 ACTGAAATTTCAGCTCAACTAAA
1 ACTGAAATTCCAGCTCAACCAAA
* *
224224 TC-GAAATTCCAGCT-TACCAAA
1 ACTGAAATTCCAGCTCAACCAAA
224245 ACTGAAATTCCAGCTC-ACCAA
1 ACTGAAATTCCAGCTCAACCAA
224266 CACCCCAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
21 6 0.17
22 28 0.80
23 1 0.03
ACGTcount: A:0.40, C:0.28, G:0.09, T:0.23
Consensus pattern (23 bp):
ACTGAAATTCCAGCTCAACCAAA
Found at i:224325 original size:10 final size:10
Alignment explanation
Indices: 224278--224335 Score: 53
Period size: 10 Copynumber: 5.8 Consensus size: 10
224268 CCCCAATTCT
224278 GTCGTTGATC
1 GTCGTTGATC
* * *
224288 GTTGTTTACC
1 GTCGTTGATC
*
224298 GCCGTTGATC
1 GTCGTTGATC
* *
224308 GCCATTGATC
1 GTCGTTGATC
224318 GTCGTTGATC
1 GTCGTTGATC
*
224328 ATCGTTGA
1 GTCGTTGA
224336 CTGACTTTGT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
10 37 1.00
ACGTcount: A:0.14, C:0.22, G:0.26, T:0.38
Consensus pattern (10 bp):
GTCGTTGATC
Found at i:226059 original size:24 final size:24
Alignment explanation
Indices: 226019--226096 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
226009 GTTTAGATTT
*
226019 CGAGCCCGAAG-ATGAGCCCAATGA
1 CGAGCCCG-AGTACGAGCCCAATGA
* **
226043 CGAGCCCGAGTACGAGCTCACGGA
1 CGAGCCCGAGTACGAGCCCAATGA
*
226067 CGAGCCC-ATTGACGAGCCC-ATGGA
1 CGAGCCCGAGT-ACGAGCCCAAT-GA
226091 CGAGCC
1 CGAGCC
226097 TAATTACCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
23 4 0.09
24 39 0.91
ACGTcount: A:0.27, C:0.33, G:0.31, T:0.09
Consensus pattern (24 bp):
CGAGCCCGAGTACGAGCCCAATGA
Found at i:226086 original size:12 final size:12
Alignment explanation
Indices: 226032--226096 Score: 60
Period size: 12 Copynumber: 5.4 Consensus size: 12
226022 GCCCGAAGAT
*
226032 GAGCCCAATGAC
1 GAGCCCATTGAC
*
226044 GAGCCCGAGT-AC
1 GAGCCC-ATTGAC
* **
226056 GAGCTCACGGAC
1 GAGCCCATTGAC
226068 GAGCCCATTGAC
1 GAGCCCATTGAC
*
226080 GAGCCCATGGAC
1 GAGCCCATTGAC
226092 GAGCC
1 GAGCC
226097 TAATTACCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
11 1 0.02
12 40 0.93
13 2 0.05
ACGTcount: A:0.26, C:0.34, G:0.31, T:0.09
Consensus pattern (12 bp):
GAGCCCATTGAC
Found at i:227529 original size:60 final size:59
Alignment explanation
Indices: 227456--227870 Score: 277
Period size: 60 Copynumber: 7.1 Consensus size: 59
227446 ACGAAAAATT
* *
227456 GGTGTCGGCCATTGCATGACCAATACTAAAAAATTTGATTTTTTTATCACATAAATAGGG
1 GGTGTCGGCCATTGCATGACCAACACTAAAAAATTTGATTTTTTTATCAGATAAA-AGGG
* * * * *
227516 GGTGTCGGCCATTGCATGATCAACACTAAAAAAATTTAAAAATTTTTTATCTGACAAAAAGGG
1 GGTGTCGGCCATTGCATGACCAACACT-AAAAAATTT--GATTTTTTTATCAGA-TAAAAGGG
* * * *
227579 AGTGTTGGTCATTGCAT-AGCCAACACCAAAAAATTTGATTTTTTTATCAGAT-AAA---
1 GGTGTCGGCCATTGCATGA-CCAACACTAAAAAATTTGATTTTTTTATCAGATAAAAGGG
* * * * *
227634 --TAGT-GG--A----ATGGCCGACACCAAAAGAATTTGAAATTTTTTTATCTGAAAAAAGGG
1 GGT-GTCGGCCATTGCATGACCAACACTAAAA-AATTTG--ATTTTTTTATCAGATAAAAGGG
* * * *
227688 AGAGTCGGCCATTGCATGGCCAACACAAAAAAATTTGATTTTTTTATCAGATAAATA-GG
1 GGTGTCGGCCATTGCATGACCAACACTAAAAAATTTGATTTTTTTATCAGATAAA-AGGG
** * * ** * * * * *
227747 GGTGTCGGTTATGGTATGTGCAACACCAAAAAAATTAAATTTTTTATCTGACTAAAAGGG
1 GGTGTCGGCCATTGCATGACCAACACTAAAAAATTTGATTTTTTTATCAGA-TAAAAGGG
* * * *
227807 GCTATCGGCCATTGCATGACTAACA-TAAAAAAATTTGATTTTTTTTTCAGATTAAAAGGG
1 GGTGTCGGCCATTGCATGACCAACACT-AAAAAATTTGATTTTTTTATCAGA-TAAAAGGG
227867 GGTG
1 GGTG
227871 CCATGTAATG
Statistics
Matches: 272, Mismatches: 56, Indels: 54
0.71 0.15 0.14
Matches are distributed among these distances:
47 13 0.05
48 6 0.02
50 13 0.05
51 4 0.01
53 3 0.01
54 2 0.01
55 2 0.01
56 2 0.01
58 4 0.01
59 57 0.21
60 89 0.33
61 15 0.06
62 24 0.09
63 35 0.13
64 3 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (59 bp):
GGTGTCGGCCATTGCATGACCAACACTAAAAAATTTGATTTTTTTATCAGATAAAAGGG
Found at i:227740 original size:109 final size:110
Alignment explanation
Indices: 227538--227745 Score: 328
Period size: 109 Copynumber: 1.9 Consensus size: 110
227528 TGCATGATCA
* * * *
227538 ACACTAAAAAAATTTAAAAATTTTTTATCTGACAAAAAGGGAGTGTTGGTCATTGCATAGCCAAC
1 ACACCAAAAAAATTTAAAAATTTTTTATCTGACAAAAAGGGAGAGTCGGCCATTGCATAGCCAAC
*
227603 ACCAAAAAATTTGATTTTTTTATCAGATAAATAGTGGAATGGCCG
66 ACAAAAAAATTTGATTTTTTTATCAGATAAATAGTGGAATGGCCG
* * * *
227648 ACACCAAAAGAATTTGAAATTTTTTTATCTGA-AAAAAGGGAGAGTCGGCCATTGCATGGCCAAC
1 ACACCAAAAAAATTTAAAAATTTTTTATCTGACAAAAAGGGAGAGTCGGCCATTGCATAGCCAAC
227712 ACAAAAAAATTTGATTTTTTTATCAGATAAATAG
66 ACAAAAAAATTTGATTTTTTTATCAGATAAATAG
227746 GGGTGTCGGT
Statistics
Matches: 89, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
109 61 0.69
110 28 0.31
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.30
Consensus pattern (110 bp):
ACACCAAAAAAATTTAAAAATTTTTTATCTGACAAAAAGGGAGAGTCGGCCATTGCATAGCCAAC
ACAAAAAAATTTGATTTTTTTATCAGATAAATAGTGGAATGGCCG
Found at i:227867 original size:119 final size:121
Alignment explanation
Indices: 227648--227867 Score: 308
Period size: 119 Copynumber: 1.8 Consensus size: 121
227638 GGAATGGCCG
* *
227648 ACACCAAAAGAATTTGAAATTTTTTTATCTGAAAAAAGGGAGAGTCGGCCATTGCATGGCCAACA
1 ACACCAAAAGAAATTGAAATTTTTTTATCTGAAAAAAGGGAGAGTCGGCCATTGCATGACCAACA
227713 CAAAAAAATTTGATTTTTTTATCAGATAAATAGGGGTGTCGGTTATGGTATGTGCA
66 CAAAAAAATTTGATTTTTTTATCAGATAAATAGGGGTGTCGGTTATGGTATGTGCA
* *
227769 ACACCAAAA-AAATT-AAA-TTTTTTATCTGACTAAAAGGG-GCTA-TCGGCCATTGCATGACTA
1 ACACCAAAAGAAATTGAAATTTTTTTATCTGA-AAAAAGGGAG--AGTCGGCCATTGCATGACCA
* *
227829 ACATAAAAAAATTTGATTTTTTTTTCAGATTAAA-AGGGG
63 ACACAAAAAAATTTGATTTTTTTATCAGA-TAAATAGGGG
227868 GTGCCATGTA
Statistics
Matches: 89, Mismatches: 6, Indels: 10
0.85 0.06 0.10
Matches are distributed among these distances:
118 13 0.15
119 58 0.65
120 9 0.10
121 9 0.10
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (121 bp):
ACACCAAAAGAAATTGAAATTTTTTTATCTGAAAAAAGGGAGAGTCGGCCATTGCATGACCAACA
CAAAAAAATTTGATTTTTTTATCAGATAAATAGGGGTGTCGGTTATGGTATGTGCA
Found at i:228654 original size:23 final size:23
Alignment explanation
Indices: 228609--228655 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
228599 ATAACCTAAG
228609 TTACATGAAATAAATAAAAAAAT
1 TTACATGAAATAAATAAAAAAAT
228632 TTACATGAAATAAATAAAAAAAT
1 TTACATGAAATAAATAAAAAAAT
228655 T
1 T
228656 AAGTGGGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (23 bp):
TTACATGAAATAAATAAAAAAAT
Found at i:229734 original size:89 final size:88
Alignment explanation
Indices: 229582--229785 Score: 259
Period size: 89 Copynumber: 2.3 Consensus size: 88
229572 ATTCAAAATT
* * ** * *
229582 TTCGTATTACTTTTGTATTTATAAATCAATTTTAGTCCATATTATTTTTTTGTCGAATTTTATAT
1 TTCGTATT--TTTTGTATCTATAAATCAAATTTAACCCATATTATTTGTGTGTCGAATTTTATAT
229647 TTTCATATATTAAGTTTCTA-AGATG
64 TTTCATATATTAAGTTTCTAGA-ATG
229672 TTCGTATTGTTTTGTATCTATAAATCAAATTTAACCCATATTATTTG-GTGTTCGAATTTTATAT
1 TTCGTATT-TTTTGTATCTATAAATCAAATTTAACCCATATTATTTGTGTG-TCGAATTTTATAT
* *
229736 TTTCATGTATTAATTTTCTAGAATG
64 TTTCATATATTAAGTTTCTAGAATG
*
229761 TTTGTATTTTATTGTATCTATAAAT
1 TTCGTATTTT-TTGTATCTATAAAT
229786 TTAATTTTTT
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
88 4 0.04
89 88 0.87
90 9 0.09
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.53
Consensus pattern (88 bp):
TTCGTATTTTTTGTATCTATAAATCAAATTTAACCCATATTATTTGTGTGTCGAATTTTATATTT
TCATATATTAAGTTTCTAGAATG
Found at i:232463 original size:3 final size:3
Alignment explanation
Indices: 232455--232526 Score: 144
Period size: 3 Copynumber: 24.0 Consensus size: 3
232445 TTGGAGTTCC
232455 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
232503 ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT
232527 TGGTTTTGGA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:244012 original size:30 final size:29
Alignment explanation
Indices: 243976--244221 Score: 171
Period size: 30 Copynumber: 8.3 Consensus size: 29
243966 AGAAATAATG
*
243976 TTTTAACCCTCAAATTTTCCTAAAATCACA
1 TTTTAACCCT-AAATTTTCCTAAAATTACA
* *
244006 TTTTAACCCTTGAACTTTTCC-AAAATCACA
1 TTTTAACCC-T-AAATTTTCCTAAAATTACA
** ** *
244036 TTTTAACCAGAAAACTTCACTAAAATCACA
1 TTTTAACCCTAAATTTTC-CTAAAATTACA
* *
244066 TTTTGACACCTACATTTCTCC-AAAATTACA
1 TTTTAAC-CCTAAATTT-TCCTAAAATTACA
*
244096 TTTTGACCCCTAAACTTCTT--TAAAATTACA
1 TTTT-AACCCTAAA-TT-TTCCTAAAATTACA
* *
244126 TTTTAACCCTTAACTTTCTCTAAAATTACA
1 TTTTAACCCTAAATTTTC-CTAAAATTACA
* * *
244156 TTTTGACCCTAAACTTCCCTAAAATTACA
1 TTTTAACCCTAAATTTTCCTAAAATTACA
* * *
244185 TCTTAACCCCAAACATTTCC-AAAA-TAGCA
1 TTTTAACCCTAAA-TTTTCCTAAAATTA-CA
244214 TTTTAACC
1 TTTTAACC
244222 TCGAATTCTC
Statistics
Matches: 173, Mismatches: 29, Indels: 29
0.75 0.13 0.13
Matches are distributed among these distances:
27 2 0.01
28 8 0.05
29 42 0.24
30 100 0.58
31 18 0.10
32 3 0.02
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.35
Consensus pattern (29 bp):
TTTTAACCCTAAATTTTCCTAAAATTACA
Done.