Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006827.1 Kokia drynarioides strain JFW-HI SEQ_121426, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10238
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:8409 original size:20 final size:20

Alignment explanation


    Indices: 8386--8423  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       8376 ATTTAGTCAT

                       *        
       8386 TTTTATTTTTATTTTAATAC
          1 TTTTATTTTTAATTTAATAC

                              
       8406 TTTTATTTTTAATTTAAT
          1 TTTTATTTTTAATTTAAT

       8424 TTTTAAATCC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71


Consensus pattern (20 bp):   
TTTTATTTTTAATTTAATAC
Done.