genome.fa.s6828.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006828.1 Kokia drynarioides strain JFW-HI SEQ_121427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79957

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5344--5398	17	3.4	16	80	10	67	41	0	3	54	1.18
5327--5398	32	2.2	33	90	9	112	40	2	4	52	1.35
5375--5443	37	1.9	36	85	5	95	46	1	5	46	1.35
6246--6300	3	18.0	3	84	3	65	60	1	1	36	1.18
17403--17709	49	6.2	49	68	10	160	38	21	26	14	1.91
17507--17715	98	2.1	98	78	3	215	35	21	27	15	1.93
17403--17709	147	2.1	148	84	1	393	38	21	26	14	1.91
17540--17750	98	2.2	98	82	1	244	35	21	25	17	1.95
18353--18424	17	4.4	16	79	10	83	41	1	2	54	1.23
18364--18424	6	10.0	6	73	16	54	42	1	1	54	1.20
19223--19260	19	2.0	19	94	0	67	55	10	0	34	1.34
20026--20224	30	6.8	29	73	10	145	34	22	2	41	1.65
20026--20216	29	6.5	29	71	11	93	34	20	1	43	1.61
20026--20462	59	7.2	59	75	14	254	32	24	2	40	1.69
20154--20295	71	2.0	71	88	2	214	30	28	2	38	1.71
20237--20345	30	3.7	30	78	9	116	31	25	1	41	1.66
20036--20403	189	1.9	190	82	5	460	32	23	2	41	1.68
20225--20549	29	11.1	30	68	18	145	31	26	3	38	1.74
20225--20549	59	5.5	57	78	9	268	31	26	3	38	1.74
20449--20549	28	3.5	28	75	14	98	32	25	4	36	1.78
20225--20549	117	2.8	118	78	7	351	31	26	3	38	1.74
25075--25166	44	2.1	44	85	4	123	14	36	22	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25193--25321	30	4.3	30	83	1	134	18	26	15	39	1.90
25183--25321	60	2.3	59	81	1	152	19	25	15	39	1.91
27404--27472	31	2.2	32	86	5	95	24	14	8	52	1.70
27566--27642	32	2.4	33	82	8	90	23	15	9	51	1.71
27359--27667	161	1.9	161	89	3	480	29	17	8	44	1.78
27707--27741	18	1.9	18	88	11	54	20	2	2	74	1.08
33349--33495	74	2.0	75	95	2	269	47	11	5	35	1.63
37758--37816	29	2.0	30	86	3	84	30	5	15	49	1.66
40515--40638	62	2.0	62	95	3	223	27	10	22	39	1.87
41489--41548	31	1.9	31	82	0	75	23	11	13	51	1.73
47813--47857	3	15.0	3	85	0	63	28	2	33	35	1.70
51065--51108	21	2.1	22	84	16	58	50	4	4	40	1.43
58434--58564	62	2.1	62	83	6	160	19	12	14	52	1.74
60206--60240	4	8.8	4	93	0	61	51	0	20	28	1.47
78671--78706	17	2.2	17	90	5	56	22	0	0	77	0.76
78677--78715	18	2.2	18	86	4	53	23	0	2	74	0.94

Tables:   1

The End!