Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000683.1 Kokia drynarioides strain JFW-HI SEQ_111679, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 927

Length: 1545
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38


Found at i:429 original size:24 final size:25

Alignment explanation


    Indices: 399--465  Score: 88
    Period size: 24  Copynumber: 2.8  Consensus size: 25

        389 TGTGTAGTAT

                                     
        399 AAAATTATAAAATTAAATATTG-TA
          1 AAAATTATAAAATTAAATATTGATA

                            *        
        423 AAAATTATAAAA--AATTATTGATA
          1 AAAATTATAAAATTAAATATTGATA

             *                   
        446 ATAA-TATAAAATTAAATATT
          1 AAAATTATAAAATTAAATATT

        466 CTATTTTTTT


Statistics
Matches: 37,  Mismatches: 3, Indels: 6
        0.80            0.07        0.13

Matches are distributed among these distances:
  22   14  0.38
  23    5  0.14
  24   18  0.49

ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37


Consensus pattern (25 bp):   
AAAATTATAAAATTAAATATTGATA

Found at i:1268 original size:22 final size:22

Alignment explanation


    Indices: 1218--1269  Score: 59
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       1208 GTTTTATTGT

                  *               
       1218 AACAATATTTTAATTTGACATG
          1 AACAATTTTTTAATTTGACATG

            ***                *  
       1240 TTTAATTTTTTAATTTGACTTG
          1 AACAATTTTTTAATTTGACATG

                    
       1262 AACAATTT
          1 AACAATTT

       1270 CATTCGACTT


Statistics
Matches: 22,  Mismatches: 8, Indels: 0
        0.73            0.27        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.35, C:0.08, G:0.08, T:0.50


Consensus pattern (22 bp):   
AACAATTTTTTAATTTGACATG
Done.