Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006834.1 Kokia drynarioides strain JFW-HI SEQ_121433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8645
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Found at i:872 original size:20 final size:19

Alignment explanation


    Indices: 847--903  Score: 62
    Period size: 19  Copynumber: 3.0  Consensus size: 19

        837 TTGGTATTCT

                      **        
        847 AAAATTTTTAGTCAGATATC
          1 AAAATTTTTAACCA-ATATC

                               
        867 AAAATTTTTAACCAATATC
          1 AAAATTTTTAACCAATATC

                 * *           
        886 AAAATCTCTAA-CAATATC
          1 AAAATTTTTAACCAATATC

        904 TTCTTAGAAA


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  18    7  0.21
  19   14  0.42
  20   12  0.36

ACGTcount: A:0.46, C:0.16, G:0.04, T:0.35


Consensus pattern (19 bp):   
AAAATTTTTAACCAATATC

Found at i:6813 original size:18 final size:19

Alignment explanation


    Indices: 6788--6831  Score: 54
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       6778 TTTTTTTATG

                  *             
       6788 AATAAAATAATTTTGTAAA-
          1 AATAAATTAATTTTG-AAAT

                     *         
       6807 AATAAATTACTTTTGAAAT
          1 AATAAATTAATTTTGAAAT

                  
       6826 AATAAA
          1 AATAAA

       6832 GTTTTATTTA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  18    3  0.14
  19   19  0.86

ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36


Consensus pattern (19 bp):   
AATAAATTAATTTTGAAAT

Found at i:8480 original size:2 final size:2

Alignment explanation


    Indices: 8473--8512  Score: 80
    Period size: 2  Copynumber: 20.0  Consensus size: 2

       8463 TATCTATCAA

                                                                       
       8473 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       8513 CAATGTCATG


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   38  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.