Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006835.1 Kokia drynarioides strain JFW-HI SEQ_121434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2367
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.33

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:2062 original size:18 final size:18

Alignment explanation


    Indices: 2039--2075  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       2029 CCGGTTGATA

                              
       2039 ATGATGATGAGACCGATG
          1 ATGATGATGAGACCGATG

                        *     
       2057 ATGATGATGAGATCGATG
          1 ATGATGATGAGACCGATG

             
       2075 A
          1 A

       2076 GTCGAATGAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.35, C:0.08, G:0.32, T:0.24


Consensus pattern (18 bp):   
ATGATGATGAGACCGATG
Done.