Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006840.1 Kokia drynarioides strain JFW-HI SEQ_121439, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86708
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33
Found at i:3724 original size:19 final size:20
Alignment explanation
Indices: 3678--3717 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
3668 CTCCACCCGC
3678 CCAACCCTGCCTCATCCCCA
1 CCAACCCTGCCTCATCCCCA
3698 CCAACCCT-CCTCATCCCCA
1 CCAACCCTGCCTCATCCCCA
3717 C
1 C
3718 TCGCCCTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.20, C:0.62, G:0.03, T:0.15
Consensus pattern (20 bp):
CCAACCCTGCCTCATCCCCA
Found at i:6094 original size:45 final size:45
Alignment explanation
Indices: 6007--6095 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
5997 AGATATGTTT
** *
6007 CTATAACATGTTTGGATATCATAGATGGGCTTACACATGTCCAAC
1 CTATAACATGTTTGGATATCATAGAAAGGCTTACACACGTCCAAC
* *
6052 CTATAACA-GATTTGGATATCATAGAAAGGTTTGCACACGTCCAA
1 CTATAACATG-TTTGGATATCATAGAAAGGCTTACACACGTCCAA
6096 AGTATCAACA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
44 1 0.03
45 37 0.97
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (45 bp):
CTATAACATGTTTGGATATCATAGAAAGGCTTACACACGTCCAAC
Found at i:7801 original size:19 final size:19
Alignment explanation
Indices: 7750--7801 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 19
7740 TTTAAGCTTG
*
7750 AAATTTTAAAAAAATATTT
1 AAATTTTAAAAAAACATTT
*
7769 AAATATTATGAAAATAACA-TT
1 AAAT-TT-T-AAAAAAACATTT
7790 AAATTTTAAAAA
1 AAATTTTAAAAA
7802 GTATTGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
18 4 0.15
19 5 0.19
20 4 0.15
21 7 0.26
22 7 0.26
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
AAATTTTAAAAAAACATTT
Found at i:7907 original size:13 final size:13
Alignment explanation
Indices: 7891--7935 Score: 63
Period size: 13 Copynumber: 3.3 Consensus size: 13
7881 TAAATTATAT
7891 TAAAAAATGTTTA
1 TAAAAAATGTTTA
*
7904 TAAAAAAAGTTTA
1 TAAAAAATGTTTA
7917 TTAAAATAATGTTTA
1 -TAAAA-AATGTTTA
7932 TAAA
1 TAAA
7936 GATTTTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 12 0.43
14 9 0.32
15 7 0.25
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.38
Consensus pattern (13 bp):
TAAAAAATGTTTA
Found at i:7911 original size:14 final size:14
Alignment explanation
Indices: 7892--7935 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
7882 AAATTATATT
7892 AAAAAATGTTTATA
1 AAAAAATGTTTATA
7906 AAAAAA-GTTTATTA
1 AAAAAATGTTTA-TA
*
7920 AAATAATGTTTATA
1 AAAAAATGTTTATA
7934 AA
1 AA
7936 GATTTTAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 5 0.19
14 17 0.63
15 5 0.19
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AAAAAATGTTTATA
Found at i:14319 original size:17 final size:17
Alignment explanation
Indices: 14297--14331 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14287 TAAATAAATT
14297 ATTAAAAA-ATTTATAAA
1 ATTAAAAATATTT-TAAA
14314 ATTAAAAATATTTTAAA
1 ATTAAAAATATTTTAAA
14331 A
1 A
14332 AAATAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
ATTAAAAATATTTTAAA
Found at i:14328 original size:19 final size:17
Alignment explanation
Indices: 14297--14341 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
14287 TAAATAAATT
*
14297 ATTAAAAAATTTATAAA
1 ATTAAAAAATTTAAAAA
14314 ATTAAAAATATTTTAAAAA
1 ATTAAAAA-A-TTTAAAAA
*
14333 AATAAAAAA
1 ATTAAAAAA
14342 ATGATTTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 8 0.33
18 2 0.08
19 14 0.58
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
ATTAAAAAATTTAAAAA
Found at i:15305 original size:30 final size:27
Alignment explanation
Indices: 15244--15296 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
15234 ATCCATACTA
* *
15244 TTATTACAAGGCATCAATTCTAATTTC
1 TTATTACAAGGAATCAATTCAAATTTC
*
15271 TTATTACAAGGAATCGATTCAAATTT
1 TTATTACAAGGAATCAATTCAAATTT
15297 ATTCTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (27 bp):
TTATTACAAGGAATCAATTCAAATTTC
Found at i:23096 original size:18 final size:18
Alignment explanation
Indices: 23056--23115 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
23046 TATTATATAA
*
23056 TATTTAAATATATAATTT
1 TATTTAAATATATATTTT
*
23074 GATTTAAATATATATTTT
1 TATTTAAATATATATTTT
*
23092 TATTTTAAT-TAATATATTT
1 TATTTAAATAT-ATAT-TTT
23111 TATTT
1 TATTT
23116 TCATTTAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
17 1 0.03
18 27 0.75
19 8 0.22
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TATTTAAATATATATTTT
Found at i:23722 original size:23 final size:25
Alignment explanation
Indices: 23696--23752 Score: 64
Period size: 28 Copynumber: 2.2 Consensus size: 25
23686 AAGGATAATA
23696 AATAT-TATT-TTGGCTATCTTGCT
1 AATATATATTATTGGCTATCTTGCT
*
23719 AATATAAATTTTGATTGGCTATCTTGCT
1 AATAT--ATATT-ATTGGCTATCTTGCT
23747 AATATA
1 AATATA
23753 AATTTCGATT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 5 0.18
26 4 0.14
28 19 0.68
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (25 bp):
AATATATATTATTGGCTATCTTGCT
Found at i:23738 original size:28 final size:28
Alignment explanation
Indices: 23705--23762 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
23695 AAATATTATT
*
23705 TTGGCTATCTTGCTAATATAAATTTTGA
1 TTGGCTATCTTGCTAATATAAATTTCGA
23733 TTGGCTATCTTGCTAATATAAATTTCGA
1 TTGGCTATCTTGCTAATATAAATTTCGA
23761 TT
1 TT
23763 TATGATGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.47
Consensus pattern (28 bp):
TTGGCTATCTTGCTAATATAAATTTCGA
Found at i:23814 original size:30 final size:30
Alignment explanation
Indices: 23780--23871 Score: 73
Period size: 30 Copynumber: 3.0 Consensus size: 30
23770 GAAATGTGTT
23780 TGAAGATCAAATTGATAAAATTTATAAATA
1 TGAAGATCAAATTGATAAAATTTATAAATA
* * *
23810 TGAAGAGTTAAATTTGTTAAATTATTTA-GAAT-
1 TGAAGA-TCAAA-TTGATAAA--ATTTATAAATA
* * *
23842 TG-AGATCAAATTGATAGAATGTGTAAATA
1 TGAAGATCAAATTGATAAAATTTATAAATA
23871 T
1 T
23872 TAAAGACTAA
Statistics
Matches: 47, Mismatches: 9, Indels: 13
0.68 0.13 0.19
Matches are distributed among these distances:
27 3 0.06
28 3 0.06
29 7 0.15
30 10 0.21
31 7 0.15
32 9 0.19
33 3 0.06
34 5 0.11
ACGTcount: A:0.46, C:0.02, G:0.15, T:0.37
Consensus pattern (30 bp):
TGAAGATCAAATTGATAAAATTTATAAATA
Found at i:27529 original size:7 final size:7
Alignment explanation
Indices: 27517--27552 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
27507 AAAATATATT
27517 TAAATAA
1 TAAATAA
27524 TAAATAA
1 TAAATAA
27531 TAAATAA
1 TAAATAA
27538 TAAATAA
1 TAAATAA
27545 TAAATAA
1 TAAATAA
27552 T
1 T
27553 TAATCGGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TAAATAA
Found at i:29187 original size:22 final size:22
Alignment explanation
Indices: 29161--29204 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
29151 TTCATTCAAA
29161 ATTAT-TTAA-AATAATATAAAAT
1 ATTATATTAATAA-AAT-TAAAAT
29183 ATTATATTAATAAAATTAAAAT
1 ATTATATTAATAAAATTAAAAT
29205 TAAAAATCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.55
23 7 0.35
24 2 0.10
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTATATTAATAAAATTAAAAT
Found at i:30192 original size:12 final size:13
Alignment explanation
Indices: 30175--30206 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
30165 TTTTTTTGTG
30175 ATAATTATAAT-T
1 ATAATTATAATGT
30187 ATAATT-TAATGT
1 ATAATTATAATGT
30199 ATAATTAT
1 ATAATTAT
30207 TAGTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.22
12 13 0.72
13 1 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
ATAATTATAATGT
Found at i:33232 original size:117 final size:117
Alignment explanation
Indices: 33024--33423 Score: 602
Period size: 117 Copynumber: 3.4 Consensus size: 117
33014 GTTGTATAAT
* * * *
33024 AGGTATCGGTAGATTAAGTACTTGTATCGGTAGAAGTTATAGGGTATAAGAGAGGTTGTTCACTG
1 AGGTATCGATAGTTTAAGTACTTGTATCGGTAGAAGTTACAGGGTAGAAGAGAGGTTGTTCACTG
33089 ACTTGAGTTGTTTCGGTAGTTGTATAATAGGTATCGGTAGTTCTGTACATTG
66 ACTTGAGTTGTTTCGGTAGTTGTATAATAGGTATCGGTAGTTCTGTACATTG
* * * *
33141 AGGTATCGACAATTTAAGTATTTGTATCGGTAGAAGTTGCAGGGTAGAAGAGAGGTTGTTCACTG
1 AGGTATCGATAGTTTAAGTACTTGTATCGGTAGAAGTTACAGGGTAGAAGAGAGGTTGTTCACTG
* * *
33206 ACTTGAGTTGTTTCGGTAGTTATATAATAGGTTTCAGTAGTTCTGTACATTG
66 ACTTGAGTTGTTTCGGTAGTTGTATAATAGGTATCGGTAGTTCTGTACATTG
* * * * * * *
33258 AGGTATCGATAGTTTAAGTATTTGTATCGGTTGAAGTTGCAGAGTAGAAGAGAGGTTATTTACCG
1 AGGTATCGATAGTTTAAGTACTTGTATCGGTAGAAGTTACAGGGTAGAAGAGAGGTTGTTCACTG
* * *
33323 ACTTGAGTTGTTTCGGTAGTTGTATAATAGATATTGGTAGTTCTGTAAATTG
66 ACTTGAGTTGTTTCGGTAGTTGTATAATAGGTATCGGTAGTTCTGTACATTG
*
33375 AGGTATCGATAGTTTAAGTACTTGTATCGGTAGAAGCTACAGGGTAGAA
1 AGGTATCGATAGTTTAAGTACTTGTATCGGTAGAAGTTACAGGGTAGAA
33424 CGTTTTAGCT
Statistics
Matches: 254, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
117 254 1.00
ACGTcount: A:0.27, C:0.09, G:0.28, T:0.36
Consensus pattern (117 bp):
AGGTATCGATAGTTTAAGTACTTGTATCGGTAGAAGTTACAGGGTAGAAGAGAGGTTGTTCACTG
ACTTGAGTTGTTTCGGTAGTTGTATAATAGGTATCGGTAGTTCTGTACATTG
Found at i:35156 original size:25 final size:24
Alignment explanation
Indices: 35127--35200 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
35117 TAAAATAATC
*
35127 TAAATTAATAAAAATTTTATTGAAA
1 TAAATTAA-AAAAATTTAATTGAAA
*
35152 TAAA-TAAACAGAATTTAATTGAAA
1 TAAATTAAA-AAAATTTAATTGAAA
* *
35176 CAAATAAAAAAAAATTTAATTGAAA
1 TAAAT-TAAAAAAATTTAATTGAAA
35201 AATTATTTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
23 1 0.02
24 19 0.46
25 18 0.44
26 3 0.07
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (24 bp):
TAAATTAAAAAAATTTAATTGAAA
Found at i:35172 original size:24 final size:25
Alignment explanation
Indices: 35136--35200 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
35126 CTAAATTAAT
* *
35136 AAAAATTTTATTGAAATAAAT-AAA
1 AAAAATTTAATTGAAACAAATAAAA
* *
35160 CAGAATTTAATTGAAACAAATAAAA
1 AAAAATTTAATTGAAACAAATAAAA
35185 AAAAATTTAATTGAAA
1 AAAAATTTAATTGAAA
35201 AATTATTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 17 0.50
25 17 0.50
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (25 bp):
AAAAATTTAATTGAAACAAATAAAA
Found at i:46658 original size:31 final size:32
Alignment explanation
Indices: 46618--46682 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
46608 TCAACATAAT
46618 AAAAAATTTA-G-ATTTATTATTATATT-TTTTG
1 AAAAAATTTATGTATTT-TTA-TATATTCTTTTG
*
46649 AAAATATTTATGTATTTTTATATATTCTTTTG
1 AAAAAATTTATGTATTTTTATATATTCTTTTG
46681 AA
1 AA
46683 GTTTTTAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 15 0.50
32 11 0.37
33 4 0.13
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (32 bp):
AAAAAATTTATGTATTTTTATATATTCTTTTG
Found at i:48384 original size:18 final size:18
Alignment explanation
Indices: 48357--48391 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
48347 AGCACCAAAG
48357 CTTTCATCCTCCTCCTCA
1 CTTTCATCCTCCTCCTCA
* *
48375 CTTTCTTCCTCTTCCTC
1 CTTTCATCCTCCTCCTC
48392 TTCTTCATTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.49, G:0.00, T:0.46
Consensus pattern (18 bp):
CTTTCATCCTCCTCCTCA
Found at i:49195 original size:25 final size:25
Alignment explanation
Indices: 49161--49210 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
49151 TGTTTTCAAA
*
49161 CTCAGGAATCAAAAAAATAAAATAG
1 CTCAGAAATCAAAAAAATAAAATAG
*
49186 CTCAGAAATCAGAAAAATAAAATAG
1 CTCAGAAATCAAAAAAATAAAATAG
49211 AATAAGCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.16
Consensus pattern (25 bp):
CTCAGAAATCAAAAAAATAAAATAG
Found at i:53267 original size:30 final size:29
Alignment explanation
Indices: 53224--53312 Score: 88
Period size: 31 Copynumber: 3.0 Consensus size: 29
53214 AATTTACAAG
*
53224 AATTAGATCAAATCAAAATTTCATGTATAA
1 AATTAGATAAAATCAAAATTT-ATGTATAA
* * *
53254 AATTATATAAAATCAAAGTTTATGTATAC
1 AATTAGATAAAATCAAAATTTATGTATAA
* * *
53283 AATTACACATTAAATCATAATTTATGTATA
1 AATT--AGATAAAATCAAAATTTATGTATA
53313 GTTTTGAGAT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
29 11 0.22
30 18 0.37
31 20 0.41
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (29 bp):
AATTAGATAAAATCAAAATTTATGTATAA
Found at i:56388 original size:5 final size:5
Alignment explanation
Indices: 56378--56421 Score: 67
Period size: 5 Copynumber: 9.4 Consensus size: 5
56368 AAAGATTGAT
56378 AACAA AACAA AA-AA AACAA AACAA AA-AA AACAA AACAA AA-AA AA
1 AACAA AACAA AACAA AACAA AACAA AACAA AACAA AACAA AACAA AA
56422 AGAGTAATCG
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
4 12 0.32
5 25 0.68
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (5 bp):
AACAA
Found at i:56395 original size:9 final size:10
Alignment explanation
Indices: 56378--56421 Score: 67
Period size: 9 Copynumber: 4.7 Consensus size: 10
56368 AAAGATTGAT
56378 AACAAAACAA
1 AACAAAACAA
56388 AA-AAAACAA
1 AACAAAACAA
56397 AACAAAA-AA
1 AACAAAACAA
56406 AACAAAACAA
1 AACAAAACAA
56416 AA-AAAA
1 AACAAAA
56422 AGAGTAATCG
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 22 0.69
10 10 0.31
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (10 bp):
AACAAAACAA
Found at i:56397 original size:14 final size:14
Alignment explanation
Indices: 56378--56421 Score: 88
Period size: 14 Copynumber: 3.1 Consensus size: 14
56368 AAAGATTGAT
56378 AACAAAACAAAAAA
1 AACAAAACAAAAAA
56392 AACAAAACAAAAAA
1 AACAAAACAAAAAA
56406 AACAAAACAAAAAA
1 AACAAAACAAAAAA
56420 AA
1 AA
56422 AGAGTAATCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (14 bp):
AACAAAACAAAAAA
Found at i:65346 original size:47 final size:47
Alignment explanation
Indices: 65277--65372 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
65267 TAGACACATG
*
65277 TGGGATGTTTAGCTTACCGTCGACTCAATCCATATATCTGATTAATT
1 TGGGATGTTTAGCTTACCGTCGACTCAATCCATACATCTGATTAATT
65324 TGGGATGTTTAGCTTACCGTCGACTCAATCCATACATCTGATTAATT
1 TGGGATGTTTAGCTTACCGTCGACTCAATCCATACATCTGATTAATT
65371 TG
1 TG
65373 AGTTTAAAAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38
Consensus pattern (47 bp):
TGGGATGTTTAGCTTACCGTCGACTCAATCCATACATCTGATTAATT
Found at i:73663 original size:13 final size:14
Alignment explanation
Indices: 73645--73677 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
73635 ACAACATATT
*
73645 TATTAATT-ATAAA
1 TATTAATTAAAAAA
73658 TATTAATTAAAAAA
1 TATTAATTAAAAAA
73672 TATTAA
1 TATTAA
73678 AATCCTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TATTAATTAAAAAA
Done.