Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006843.1 Kokia drynarioides strain JFW-HI SEQ_121442, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2129
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:649 original size:23 final size:23

Alignment explanation


    Indices: 619--666  Score: 96
    Period size: 23  Copynumber: 2.1  Consensus size: 23

        609 AGTTGCCATG

                                   
        619 GAAGCTTAATTTCGGAGGAAGGT
          1 GAAGCTTAATTTCGGAGGAAGGT

                                   
        642 GAAGCTTAATTTCGGAGGAAGGT
          1 GAAGCTTAATTTCGGAGGAAGGT

              
        665 GA
          1 GA

        667 CTTGATGCAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.31, C:0.08, G:0.35, T:0.25


Consensus pattern (23 bp):   
GAAGCTTAATTTCGGAGGAAGGT
Done.