Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006846.1 Kokia drynarioides strain JFW-HI SEQ_121445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7913
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:3766 original size:30 final size:31

Alignment explanation


    Indices: 3732--3800  Score: 97
    Period size: 30  Copynumber: 2.3  Consensus size: 31

       3722 GTTATATTTA

                          *                 
       3732 ACAAAACAGTCACTCAACTT-T-GAAAATGTG
          1 ACAAAACAGTCACTAAACTTATCGAAAA-GTG

                             *             
       3762 ACAAAACAGTCACTAAAGTTATCGAAAAGTG
          1 ACAAAACAGTCACTAAACTTATCGAAAAGTG

                    
       3793 ACAAAACA
          1 ACAAAACA

       3801 ATCCTCTTGG


Statistics
Matches: 35,  Mismatches: 2, Indels: 3
        0.88            0.05        0.08

Matches are distributed among these distances:
  30   18  0.51
  31   12  0.34
  32    5  0.14

ACGTcount: A:0.49, C:0.19, G:0.13, T:0.19


Consensus pattern (31 bp):   
ACAAAACAGTCACTAAACTTATCGAAAAGTG

Done.