Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006849.1 Kokia drynarioides strain JFW-HI SEQ_121448, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3618
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:2296 original size:11 final size:11

Alignment explanation


    Indices: 2280--2313  Score: 52
    Period size: 11  Copynumber: 3.2  Consensus size: 11

       2270 CCAACCTCTA

                       
       2280 AAATTTTATTT
          1 AAATTTTATTT

                       
       2291 AAA-TTTATTT
          1 AAATTTTATTT

            *          
       2301 TAATTTTATTT
          1 AAATTTTATTT

              
       2312 AA
          1 AA

       2314 GATATACTCA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  10    9  0.45
  11   11  0.55

ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62


Consensus pattern (11 bp):   
AAATTTTATTT
Done.