Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000685.1 Kokia drynarioides strain JFW-HI SEQ_111681, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4352
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:68 original size:18 final size:19

Alignment explanation


    Indices: 47--88  Score: 52
    Period size: 20  Copynumber: 2.3  Consensus size: 19

         37 TTTATAAATA

                         *     
         47 ATTTGATT-TTTTTTAATT
          1 ATTTGATTATTTTGTAATT

                                
         65 ATTTTGATTATTTTGTAATT
          1 A-TTTGATTATTTTGTAATT

                 
         85 -TTTG
          1 ATTTG

         89 TTGAGAGGGA


Statistics
Matches: 21,  Mismatches: 1, Indels: 4
        0.81            0.04        0.15

Matches are distributed among these distances:
  18    5  0.24
  19    7  0.33
  20    9  0.43

ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69


Consensus pattern (19 bp):   
ATTTGATTATTTTGTAATT

Found at i:566 original size:23 final size:22

Alignment explanation


    Indices: 540--590  Score: 68
    Period size: 23  Copynumber: 2.3  Consensus size: 22

        530 GGTTTTGACT

                     *             
        540 TTTTTGTTTGTTAGGGTTAGGGG
          1 TTTTT-TTTATTAGGGTTAGGGG

                                   
        563 TTTTATTTTATTAGGGTTA-GGG
          1 TTTT-TTTTATTAGGGTTAGGGG

                  
        585 TTTTTT
          1 TTTTTT

        591 AAGGTATAAG


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  21    2  0.08
  22    7  0.27
  23   16  0.62
  24    1  0.04

ACGTcount: A:0.12, C:0.00, G:0.29, T:0.59


Consensus pattern (22 bp):   
TTTTTTTTATTAGGGTTAGGGG
Done.