Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006856.1 Kokia drynarioides strain JFW-HI SEQ_121455, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3126
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38


Found at i:1662 original size:43 final size:43

Alignment explanation


    Indices: 1590--2132  Score: 414
    Period size: 43  Copynumber: 12.7  Consensus size: 43

       1580 ACAAGTGATC

                                                    *   
       1590 CTTCGGTTTATCCGATGATGCA-TTGTGTGTGCCAGTATAGTTG
          1 CTTCGGTTTATCCGATGATGCACTT-TGTGTGCCAGTATATTTG

                *       *       *             *       *
       1633 CTTCAGTTTATCTGATGATGTACTTTGTGTGCCAATATATTTT
          1 CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATATTTG

               * *   * **       *   *     * *      *   
       1676 CTTTGATTTCTTTGATGATGTACTGTGTGTTCTAGTATAATTG
          1 CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATATTTG

               *                          *   *        
       1719 CTTTGGTTTATCCGATGATGCACTTTGTGTTCCAATATATTTG
          1 CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATATTTG

                *       *           *     **  *        
       1762 CTTCAGTTTATCGGATGATGCACTATGTGTTTCAATATATTTG
          1 CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATATTTG

            *      *                                    
       1805 TTTCGGTATATCCGATGATGCACTTTGTGTGCCAGTATAGTTT-
          1 CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATA-TTTG

               * *     **    *             **          
       1848 CTTTGTTTTATTTGATGGTGCACTTTGTGTGTGAGTAT-TTT-
          1 CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATATTTG

            *            *      * *                    
       1889 TTTCGGTTTATCCAATGATGAATTTTGTGTGCCAGTATATTTG
          1 CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATATTTG

                 *    * *       * * * * *  **          
       1932 CTTCGATTTAGCTGATGATGTAGTGTATATGTTAGTATATTTG
          1 CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATATTTG

                **                * *       *          
       1975 CTTCAATTTATCCGATGATGCAATGTGTGTGCTAGTATATTTG
          1 CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATATTTG

                 *      **          *            *  *   
       2018 CTTCGTTTTATCAAATGATGCACTGTGTGTGGCCA-TGTAGTTG
          1 CTTCGGTTTATCCGATGATGCACTTTGTGT-GCCAGTATATTTG

                 *                    **      *    *   
       2061 CTTCGATTTATCCGATGATGCAC-TTACGTGCCAATATAATTG
          1 CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATATTTG

             *          *                 
       2103 CGTCGGTTTATCTGATGATGCACTTATGTG
          1 CTTCGGTTTATCCGATGATGCACTT-TGTG

       2133 CTAGTATGGT


Statistics
Matches: 392,  Mismatches: 100, Indels: 15
        0.77            0.20        0.03

Matches are distributed among these distances:
  41   34  0.09
  42   32  0.08
  43  316  0.81
  44   10  0.03

ACGTcount: A:0.20, C:0.14, G:0.22, T:0.45


Consensus pattern (43 bp):   
CTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTATATTTG

Done.