Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006861.1 Kokia drynarioides strain JFW-HI SEQ_121460, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9705
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36


Found at i:5603 original size:2 final size:2

Alignment explanation


    Indices: 5584--5621  Score: 55
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       5574 CTTATTCTTG

                                                                         
       5584 TA TA T- TA T- TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       5622 GTGTGTGTGT


Statistics
Matches: 33,  Mismatches: 0, Indels: 6
        0.85            0.00        0.15

Matches are distributed among these distances:
   1    3  0.09
   2   30  0.91

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
TA

Found at i:6362 original size:3 final size:3

Alignment explanation


    Indices: 6354--6389  Score: 63
    Period size: 3  Copynumber: 12.0  Consensus size: 3

       6344 ACCACAACTG

                                                    *      
       6354 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA AAA CAA
          1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA

       6390 AGTCTACAGA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00


Consensus pattern (3 bp):   
CAA

Done.