Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006866.1 Kokia drynarioides strain JFW-HI SEQ_121465, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6336
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.39


Found at i:3500 original size:24 final size:24

Alignment explanation


    Indices: 3468--3518  Score: 93
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       3458 GGTAAGACAC

                                *   
       3468 ATTGCATTTTTAAGATAGAATTCA
          1 ATTGCATTTTTAAGATAGAACTCA

                                    
       3492 ATTGCATTTTTAAGATAGAACTCA
          1 ATTGCATTTTTAAGATAGAACTCA

               
       3516 ATT
          1 ATT

       3519 TCAAATATTA


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41


Consensus pattern (24 bp):   
ATTGCATTTTTAAGATAGAACTCA

Found at i:5605 original size:6 final size:6

Alignment explanation


    Indices: 5594--5620  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       5584 TTCTATTGAT

                                           
       5594 GCTGAA GCTGAA GCTGAA GCTGAA GCT
          1 GCTGAA GCTGAA GCTGAA GCTGAA GCT

       5621 TTTATGTTGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.30, C:0.19, G:0.33, T:0.19


Consensus pattern (6 bp):   
GCTGAA

Done.