Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006868.1 Kokia drynarioides strain JFW-HI SEQ_121467, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4818
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34


Found at i:2370 original size:21 final size:21

Alignment explanation


    Indices: 2344--2402  Score: 93
    Period size: 21  Copynumber: 2.8  Consensus size: 21

       2334 TTCTATCGAT

                                  
       2344 ACAATG-ATGACTTCTACTGAA
          1 ACAATGCATG-CTTCTACTGAA

             *                   
       2365 ATAATGCATGCTTCTACTGAA
          1 ACAATGCATGCTTCTACTGAA

                             
       2386 ACAATGCATGCTTCTAC
          1 ACAATGCATGCTTCTAC

       2403 CGATACTGAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   32  0.91
  22    3  0.09

ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31


Consensus pattern (21 bp):   
ACAATGCATGCTTCTACTGAA
Done.