Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006869.1 Kokia drynarioides strain JFW-HI SEQ_121468, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3042
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.38


Found at i:485 original size:25 final size:25

Alignment explanation


    Indices: 447--495  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        437 AAAATTTTTA

                          **         
        447 TTTTACATTTATTTGTATTTAATAT
          1 TTTTACATTTATTTAAATTTAATAT

                                     
        472 TTTTA-ATTTAATTTAAATTTAATA
          1 TTTTACATTT-ATTTAAATTTAATA

        496 AATTACAAAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24    4  0.19
  25   17  0.81

ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61


Consensus pattern (25 bp):   
TTTTACATTTATTTAAATTTAATAT
Done.