Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006874.1 Kokia drynarioides strain JFW-HI SEQ_121475, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2583
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.37


Found at i:2559 original size:210 final size:210

Alignment explanation


    Indices: 2164--2569  Score: 517
    Period size: 210  Copynumber: 1.9  Consensus size: 210

       2154 AGGCTTAAGT

                       **  *                   *    *        *               
       2164 TTTTGAATTTACGAGGCTGCAAAAGTATGAGGAGTTTTCCTACCAAAATTGGAATGGAATCTCTA
          1 TTTTGAATTTAAAAGACTGCAAAAGTATGAGGAGTCTTCCAACCAAAATCGGAATGGAATCTCTA

                                             *                               
       2229 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTCAAAGCGTTCCAGAGATTGATGGGAAAATGGA
         66 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCGTTCCAGAGATTGATGGGAAAATGGA

                *   **       *   *                  * *     *                
       2294 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCGGAAATC
        131 ATGTCTGTAAGAGCTTTATTTAGATGGGACAAACATTAAACAACTACCCTCTTCAATCGGAAATC

                           
       2359 TCAGAAGACTTAAAC
        196 TCAGAAGACTTAAAC

                                      * *             *                     *
       2374 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAATCAAAATCGGAATGGAATCTCTT
          1 TTTTGAATTTAAAAGACTGCAAAAGTATGAGGAGTCTTCCAACCAAAATCGGAATGGAATCTCTA

               *                      *  *         *    *           *  *     
       2439 GAACAGTTAATTCTTTCAGGTTGCTCCAATCTTAAAAGCTTTCCGGAGATTGATGGTAAGATGGA
         66 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCGTTCCAGAGATTGATGGGAAAATGGA

                                            **    *       *           *      
       2504 ATGTCTGCTAAGA-CTTTATTTAGATGGGACAGGCATTGAACAACTTCCCTCTTCAATTGGAAAT
        131 ATGTCTG-TAAGAGCTTTATTTAGATGGGACAAACATTAAACAACTACCCTCTTCAATCGGAAAT

              
       2568 CT
        195 CT

       2570 GAGCAATCTT


Statistics
Matches: 164,  Mismatches: 31, Indels: 2
        0.83            0.16        0.01

Matches are distributed among these distances:
 210  161  0.98
 211    3  0.02

ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Consensus pattern (210 bp):   
TTTTGAATTTAAAAGACTGCAAAAGTATGAGGAGTCTTCCAACCAAAATCGGAATGGAATCTCTA
GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCGTTCCAGAGATTGATGGGAAAATGGA
ATGTCTGTAAGAGCTTTATTTAGATGGGACAAACATTAAACAACTACCCTCTTCAATCGGAAATC
TCAGAAGACTTAAAC
Done.