Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006876.1 Kokia drynarioides strain JFW-HI SEQ_121477, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27300
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:503 original size:216 final size:215
Alignment explanation
Indices: 108--2238 Score: 2095
Period size: 216 Copynumber: 10.0 Consensus size: 215
98 ATACTTTAAG
* * * * * * * **
108 GAACCAGGAGAGAAACAATTCACACGTAAATATGTCTTTAATTCAAAGACAAAAAGCAGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * * * * * * *
173 AAATGACAAACTGTTTGGACCAAATGATGCTATTTCTCAAGCATGAAAGGTTCGAAAAATTTCTA
66 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
* * * * *
238 GAAGGAATGGATGGTCTTGAATACTTTAAGGAACCTAAGTGAAAAAAGAACTCGTAAAAGTTTGA
131 GAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGA
**
303 CAAGTTCGGAAGTTCGGTTAA
195 CAAGTTCGGAAGTTCGGCCAA
* * ** * *
324 GAACCAATAGAGAAATAATTCTCATGTAAATAATTTTTTAATCCAAAGACCAAAAATTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * ** * *
389 AAATAACAGATTATTTGGACCAAATGATGCAATTTCTCGAGAATCAAATATTCAAAAAATTGCTC
66 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
* * * *
454 CAAGGAATGAATGGTCTAGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGAAAAAGTTTGA
131 GAAGGAATG-ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGA
* * ** *
519 AAACTTCAAAAGTACGGCCAA
195 CAAGTTCGGAAGTTCGGCCAA
** *
540 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCAAAAGTTTTTTAC-
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * ** *
604 AAATGGACAAACTATTTGGACCAAATGGTGCGATTTCCCGAGGCTAGAATGCTT-GAAAAATTGC
66 AAAT-GACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATG-TTCGAAAAATTGC
* * * * * *
668 TTGAAAGG-ATCAATCATCTTGAATACTTTAAAGAACTGGAGTTATAAAAGAACTCGAAAAAGTT
129 TCG-AAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTT
* *
732 TGTCAAGTTCGGAAGTTCGGCAAA
192 TGACAAGTTCGGAAGTTCGGCCAA
* * *
756 GAACCAAGAGCG-AACAATTGTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTCTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* ** * *
820 AAATGACAGATTATTTGGACCAAGGGATGCGATTTCCCGAGAATGTAATGTTCGAAAAATTGCTC
66 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
* * * *
885 GAAGGAATCGATCATCTTTAATACTTTAAGGGAA-CGAAGTTATACAAGAACTC-AAAAAGTTTT
131 GAAGGAAT-GATCGTCTTGAATACTTTAA-GGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTG
* *
948 AAAAGTTCAGAAGTTCGGCCAA
194 ACAAGTTCGGAAGTTCGGCCAA
* * * * * * * *
970 GAACTAAGAGAGAAACCATTCTCACGTAAATAATTTTTTAATTCAAATACCGAAAGTTTTTTAC-
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * * * *
1034 TAATGGACAAAGTATTTGGACCAAATGATGTGATTTTTCGAGCATGGAATGTTTGAAAAATTGCT
66 AAAT-GACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCT
* * * *
1099 CGAAGGAATCGATCCTCTTGAAAACTTTAAGGAACCGAAGTTTTAAAAAAACTCGAAAAAGTTTG
130 CGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTG
**
1164 ACAAGTTCGGAAGTTCACCCAA
194 ACAAGTTCGGAAGTTCGGCCAA
* *
1186 GAACCAAGAGAGAAACAATTCTCACATAAATTAGTTTTTAATCCAAAGACTAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* *
1251 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTTGAGAATGAAATGTTCGAAAAATTGCT-
66 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
* * * * * *
1315 -------TGA-AG----G---A----AAGGAACCGAAGTTGTGAAAGAACTCAAAAAATTTTGAA
131 GAAGGAATGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAC
** * * *
1361 ATTTTCGAAAGTTTGACCAA
196 AAGTTCGGAAGTTCGGCCAA
* * *
1381 GAACCAAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAATGACAAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
** * * * * * **
1446 AAATGACTGATTATTTTGGACCAAAGGCTGTGATTTCTCGATAATGGAATTTTCGAAAAATTATT
66 AAATGACAAATTA-TTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCT
** * * * *
1511 CGAAATAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGGACTCGAGAAAGTTTA
130 CGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTG
* * * *
1576 AAAAGTTTGAAAGTTCAGCCAA
194 ACAAGTTCGGAAGTTCGGCCAA
* * * * *
1598 GAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGATCAAAAGTTTTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * * * * * ** * *
1663 AAAGGACAAACTGTTTGGACCAAATGGTGTGATTTCCCTAGGCTGGAATGTTTGGAAAATTGC-C
66 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
* * *
1727 CAGAGGAATCGATCGTCTTGAATACTTTAAAGAACCGAAGTTATAAAAGAACTCAAAAAAGTTTG
131 GA-AGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTG
*
1792 ACAAGTTCGGAAGTTTGGCCAA
194 ACAAGTTCGGAAGTTCGGCCAA
* * * *
1814 GAACGAAGAGA-AAA-AATTCTCAAATAAATAAGTTTTTAATCCAAAAACCAACAA-TTCTTTAC
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAA-AAGTTGTTTAC
* * *
1876 AAAATGACATATTATTTGGACCATAA-GATGTGATTTCCCGAGAATGGAATGTTC-AAAAATTTG
65 AAAATGACAAATTATTTGGACCA-AATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAA-TTG
* * * * *
1939 CTCGAAGGAATGGATCATCTTGAATACTTTAAGAAACTGAAGTTATAAAGGAACTTGAAAAAGTT
128 CTCGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTT
* * *
2004 TGAAAAGTTCAGAAGTTTGGCCAA
192 TGACAAGTTCGGAAGTTCGGCCAA
* * *** * **
2028 GAACCAAGAGAGAAATC-AGTCTCACATAAATAAGTTTTTAATTCAAAGATTGAAAGTTTTTTTG
1 GAACCAAGAGAGAAA-CAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTAC
** * * * * * *
2092 AAAGGGACAAACTA-GTGGACCAAATGATGCAATTTCTCGAGCATGGAATGTTC-AGAAAAGTAC
65 AAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGA-AAAATTGC
* * * *
2155 TCAAAGGAATCGATCCTCTTGAATACTTTAAGGAACCGAAGTTTTGAAAGAACTC-AAAAATGTT
129 TCGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAA-GTT
2219 TGACAAGTTCGGAAGTTCGG
192 TGACAAGTTCGGAAGTTCGG
2239 TGATAGCATT
Statistics
Matches: 1567, Mismatches: 300, Indels: 97
0.80 0.15 0.05
Matches are distributed among these distances:
195 119 0.08
196 42 0.03
199 1 0.00
202 1 0.00
204 1 0.00
205 2 0.00
206 1 0.00
207 2 0.00
208 1 0.00
213 5 0.00
214 226 0.14
215 390 0.25
216 656 0.42
217 120 0.08
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (215 bp):
GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
GAAGGAATGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAC
AAGTTCGGAAGTTCGGCCAA
Found at i:1120 original size:430 final size:430
Alignment explanation
Indices: 108--2238 Score: 2139
Period size: 430 Copynumber: 5.0 Consensus size: 430
98 ATACTTTAAG
* * * * * * **
108 GAACCAGGAGAGAAACAATTCACACGTAAATATGTCTTTAATTCAAAGACAAAAAGCAGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * *
173 AAATGACAAACTGTTTGGACCAAATGATGCT-ATTTCTCAAGCATGAAAGGTTCGAAAAATTTCT
66 AAATGACAAACTATTTGGACCAAATGATG-TGATTTCTCGAGCATGGAATGTTTGAAAAATTGCT
* ** * * *
237 AGAAGGAATGGATGGTCTTGAATACTTTAAGGAACCT-AAGTGAAAAAAGAACTCGTAAAAGTTT
130 CGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CTGAAGTTATAAAAGAACTCGAAAAAGTTT
** * * ** *
301 GACAAGTTCGGAAGTTCGGTTAAGAACCAATAGAGAAATAATTCTCATGTAAATAATTTTTTAAT
194 GACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
* * * *
366 CCAAAGACCAAAAATTGTTTACAAAATAACAGATTATTTGGACCAAATGATGCAATTTCTCGAGA
259 CCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGA
* * * * * *
431 ATCAAATATTCAAAAAATTGCTCCAAGGAAT-GAATGGTCTAGAATACTTTAAGGAATCGAAGTT
324 ATGAAATGTTCGAAAAATTGCTCCAAGGAATCG-ATCGTCTTGAATACTTTAAGGAACCGAAGTT
* * *
495 ATAAAAGAACTCGAAAAAGTTTGAAAACTTCAAAAGTACGGCCAA
388 AT-AAAGAACTC-AAAAAGTTTGAAAAGTTCAGAAGTTCGGCCAA
* *
540 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCAAAAGTTTTTTAC-
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * *
604 AAATGGACAAACTATTTGGACCAAATGGTGCGATTTCCCGAGGC-TAGAATGCTTGAAAAATTGC
66 AAAT-GACAAACTATTTGGACCAAATGATGTGATTTCTCGA-GCATGGAATGTTTGAAAAATTGC
* ** * *
668 TTGAAAGG-ATCAATCATCTTGAATACTTTAAAGAACTGGAGTTATAAAAGAACTCGAAAAAGTT
129 TCG-AAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGAAAAAGTT
* * * *
732 TGTCAAGTTCGGAAGTTCGGCAAAGAACCAAGAGCG-AACAATTGTCACATAAATAAGTTTTTAA
193 TGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* * ** *
796 TCCAAAGACCAAAAGTTCTTTACAAAATGACAGATTATTTGGACCAAGGGATGCGATTTCCCGAG
258 TCCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAG
* * * *
861 AATGTAATGTTCGAAAAATTGCTCGAAGGAATCGATCATCTTTAATACTTTAAGGGAA-CGAAGT
323 AATGAAATGTTCGAAAAATTGCTCCAAGGAATCGATCGTCTTGAATACTTTAA-GGAACCGAAGT
*
925 TATACAAGAACTCAAAAAGTTTTAAAAGTTCAGAAGTTCGGCCAA
387 TATA-AAGAACTCAAAAAGTTTGAAAAGTTCAGAAGTTCGGCCAA
* * * * * * *
970 GAACTAAGAGAGAAACCATTCTCACGTAAATAATTTTTTAATTCAAATACCGAAAGTTTTTTAC-
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * *
1034 TAATGGACAAAGTATTTGGACCAAATGATGTGATTTTTCGAGCATGGAATGTTTGAAAAATTGCT
66 AAAT-GACAAACTATTTGGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGAAAAATTGCT
* * * * * *
1099 CGAAGGAATCGATCCTCTTGAAAACTTTAAGGAACCGAAGTTTTAAAAAAACTCGAAAAAGTTTG
130 CGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGAAAAAGTTTG
** *
1164 ACAAGTTCGGAAGTTCACCCAAGAACCAAGAGAGAAACAATTCTCACATAAATTAGTTTTTAATC
195 ACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATC
* *
1229 CAAAGACTAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTTGAGAA
260 CAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAA
* *
1294 TGAAATGTTCGAAAAATTGCT--------T-GA-AG----G---A----AAGGAACCGAAGTTGT
325 TGAAATGTTCGAAAAATTGCTCCAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* ** * *
1338 GAAAGAACTCAAAAAATTTTGAAATTTTC-GAAAGTTTGACCAA
390 -AAAGAACTC-AAAAAGTTTGAAAAGTTCAG-AAGTTCGGCCAA
* * * *
1381 GAACCAAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAATGACAAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
** * * * ** **
1446 AAATGACTGATTATTTTGGACCAAAGGCTGTGATTTCTCGATAATGGAAT-TTTCGAAAAATTAT
66 AAATGACAAACTA-TTTGGACCAAATGATGTGATTTCTCGAGCATGGAATGTTT-GAAAAATTGC
** * * * * *
1510 TCGAAATAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGGACTCGAGAAAGTTT
129 TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGAAAAAGTTT
* * * * * * *
1575 AAAAAGTTTGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAAT
194 GACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
* * * * * * * * * * *
1640 TCAAAGATCAAAAGTTTTTTACAAAAGGACAAACTGTTTGGACCAAATGGTGTGATTTCCCTAGG
259 CCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGA
* * * * *
1705 CTGGAATGTTTGGAAAATTGC-CCAGAGGAATCGATCGTCTTGAATACTTTAAAGAACCGAAGTT
324 ATGAAATGTTCGAAAAATTGCTCCA-AGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTT
* * *
1769 ATAAAAGAACTCAAAAAAGTTTGACAAGTTCGGAAGTTTGGCCAA
388 AT-AAAGAACTC-AAAAAGTTTGAAAAGTTCAGAAGTTCGGCCAA
* * * * *
1814 GAACGAAGAGA-AAA-AATTCTCAAATAAATAAGTTTTTAATCCAAAAACCAACAA-TTCTTTAC
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA-AAGTTGTTTAC
* * * * *
1876 AAAATGACATATTATTTGGACCATAA-GATGTGATTTCCCGAGAATGGAATG-TTCAAAAATTTG
65 AAAATGACAAACTATTTGGACCA-AATGATGTGATTTCTCGAGCATGGAATGTTTGAAAAA-TTG
* * *
1939 CTCGAAGGAATGGATCATCTTGAATACTTTAAGAAACTGAAGTTATAAAGGAACTTGAAAAAGTT
128 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGAAAAAGTT
* * * *
2004 TGAAAAGTTCAGAAGTTTGGCCAAGAACCAAGAGAGAAATC-AGTCTCACATAAATAAGTTTTTA
193 TGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CAATTCTCACATAAATAAGTTTTTA
* *** * ** ** * * *
2068 ATTCAAAGATTGAAAGTTTTTTTGAAAGGGACAAACTA-GTGGACCAAATGATGCAATTTCTCGA
257 ATCCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGA
* * * * * *
2132 GCATGGAATGTTC-AGAAAAGTACTCAAAGGAATCGATCCTCTTGAATACTTTAAGGAACCGAAG
322 GAATGAAATGTTCGA-AAAATTGCTCCAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAG
* * *
2196 TTTTGAAAGAACTCAAAAATGTTTGACAAGTTCGGAAGTTCGG
386 TTAT-AAAGAACTCAAAAA-GTTTGAAAAGTTCAGAAGTTCGG
2239 TGATAGCATT
Statistics
Matches: 1417, Mismatches: 233, Indels: 101
0.81 0.13 0.06
Matches are distributed among these distances:
409 4 0.00
410 19 0.01
411 87 0.06
412 223 0.16
414 1 0.00
420 1 0.00
421 2 0.00
422 3 0.00
423 1 0.00
426 1 0.00
428 5 0.00
429 117 0.08
430 395 0.28
431 307 0.22
432 185 0.13
433 65 0.05
434 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (430 bp):
GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
AAATGACAAACTATTTGGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTC
GAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGAAAAAGTTTGA
CAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCC
AAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAAT
GAAATGTTCGAAAAATTGCTCCAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
AAGAACTCAAAAAGTTTGAAAAGTTCAGAAGTTCGGCCAA
Found at i:1461 original size:195 final size:196
Alignment explanation
Indices: 1127--1507 Score: 534
Period size: 195 Copynumber: 1.9 Consensus size: 196
1117 TGAAAACTTT
* * *
1127 AAGGAACCGAAGTTTTAAAAAAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCACCCAAGAACCA
1 AAGGAACCGAAGTTGTAAAAAAACTCAAAAAAGTTTGACAAGTTCGAAAGTTCACCCAAGAACCA
* *
1192 AGAGAGAAACAATTCTCACATAAATTAGTTTTTAATCCAAAGACTAAAAGTTGTTTACAAAATGA
66 AGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAAATGA
* *
1257 CAAATTA-TTTGGACCAAATGATGCGATTTCTTGAGAATGAAATGTTCGAAAAATTGCTTGAAGG
131 CAAATTATTTTGGACCAAAGGATGCGATTTCTCGAGAATGAAATGTTCGAAAAATTGCTTGAAGG
1321 A
196 A
* * * * *
1322 AAGGAACCGAAGTTGTGAAAGAACTCAAAAAATTTTGA-AATTTTCGAAAGTTTGA-CCAAGAAC
1 AAGGAACCGAAGTTGTAAAAAAACTCAAAAAAGTTTGACAA-GTTCGAAAG-TTCACCCAAGAAC
* *
1385 CAAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAATGACAAAAAGTTGTTTACAAAAT
64 CAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAAAT
** * * * * *
1450 GACTGATTATTTTGGACCAAAGGCTGTGATTTCTCGATAATGGAATTTTCGAAAAATT
129 GACAAATTATTTTGGACCAAAGGATGCGATTTCTCGAGAATGAAATGTTCGAAAAATT
1508 ATTCGAAATA
Statistics
Matches: 162, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
194 2 0.01
195 116 0.72
196 44 0.27
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (196 bp):
AAGGAACCGAAGTTGTAAAAAAACTCAAAAAAGTTTGACAAGTTCGAAAGTTCACCCAAGAACCA
AGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAAATGA
CAAATTATTTTGGACCAAAGGATGCGATTTCTCGAGAATGAAATGTTCGAAAAATTGCTTGAAGG
A
Found at i:1853 original size:214 final size:216
Alignment explanation
Indices: 1325--2235 Score: 903
Period size: 214 Copynumber: 4.2 Consensus size: 216
1315 TGAAGGAAAG
* * * ** * *
1325 GAACCGAAGTTGTGAAAGAACTCAAAAAATTTTGAAATTTTCGAAAGTTTGACCAAGAACCAAGA
1 GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTTTGGCCAAGAACCAAGA
* * * *
1390 GAGAAATAATTCTCACATAAATAAGTTTTTAATCCAATGA-CAAAAAGTTGTTTACAAAATGACT
66 GAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGATC-AAAAGTTTTTTACAAAAGGACA
* * * * * * * **
1454 GATTATTTTGGACCAAAGGCTGTGATTTCTCGATAATGGAAT-TTTCGAAAAATTATTCGAAATA
130 AACTAGTTTGGACCAAA-GATGTGATTTCCCGAGAATGGAATGTTT-GAAAAATTACTCGAAGGA
* * *
1518 ATGGATCGTCTTAAATACTTTAAG
193 ATCGATCGTCTTGAATACTTTAAA
* * * * * * ** *
1542 GAACCGAAGTTATAAAAGGACTCGAGAAAGTTTAAAAAGTTTGAAAGTTCAGCCAAGAACAAAGA
1 GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTTTGGCCAAGAACCAAGA
* * *
1607 GAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGATCAAAAGTTTTTTACAAAAGGACAA
66 GAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGATCAAAAGTTTTTTACAAAAGGACAA
* * ** * * *
1672 ACT-GTTTGGACCAAATGGTGTGATTTCCCTAGGCTGGAATGTTTGGAAAATTGC-CCAGAGGAA
131 ACTAGTTTGGACCAAA-GATGTGATTTCCCGAGAATGGAATGTTTGAAAAATTACTCGA-AGGAA
1735 TCGATCGTCTTGAATACTTTAAA
194 TCGATCGTCTTGAATACTTTAAA
* *
1758 GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAACGAAGA
1 GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTTTGGCCAAGAACCAAGA
* * * * *
1823 GA-AAA-AATTCTCAAATAAATAAGTTTTTAATCCAAAAACCAACAA-TTCTTTACAAAATGACA
66 GAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGATCAA-AAGTTTTTTACAAAAGGACA
* * * *
1885 TATTA-TTTGGACCATAAGATGTGATTTCCCGAGAATGGAATG-TTCAAAAATTTGCTCGAAGGA
130 AACTAGTTTGGACCA-AAGATGTGATTTCCCGAGAATGGAATGTTTGAAAAA-TTACTCGAAGGA
* *
1948 ATGGATCATCTTGAATACTTT-AA
193 ATCGATCGTCTTGAATACTTTAAA
* * ** *
1971 GAAACTGAAGTTATAAAGGAACTTGAAAAAGTTTGAAAAGTTCAGAAGTTTGGCCAAGAACCAAG
1 G-AACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTTTGGCCAAGAACCAAG
* * * ** ** *
2036 AGAGAAATCAGTCTCACATAAATAAGTTTTTAATTCAAAGATTGAAAGTTTTTTTGAAAGGGACA
65 AGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGATCAAAAGTTTTTTACAAAAGGACA
** * * * * *
2101 AACTAG--TGGACCAAATGATGCAATTTCTCGAGCATGGAATG-TTCAGAAAAGTACTCAAAGGA
130 AACTAGTTTGGACCAAA-GATGTGATTTCCCGAGAATGGAATGTTTGA-AAAATTACTCGAAGGA
* *
2163 ATCGATCCTCTTGAATACTTTAAG
193 ATCGATCGTCTTGAATACTTTAAA
* * * *
2187 GAACCGAAGTTTTGAAAGAACTCAAAAATGTTTGACAAGTTCGGAAGTT
1 GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTT
2236 CGGTGATAGC
Statistics
Matches: 569, Mismatches: 109, Indels: 34
0.80 0.15 0.05
Matches are distributed among these distances:
213 9 0.02
214 167 0.29
215 115 0.20
216 166 0.29
217 111 0.20
218 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (216 bp):
GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTTTGGCCAAGAACCAAGA
GAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGATCAAAAGTTTTTTACAAAAGGACAA
ACTAGTTTGGACCAAAGATGTGATTTCCCGAGAATGGAATGTTTGAAAAATTACTCGAAGGAATC
GATCGTCTTGAATACTTTAAA
Found at i:2203 original size:842 final size:840
Alignment explanation
Indices: 488--2163 Score: 1971
Period size: 842 Copynumber: 2.0 Consensus size: 840
478 TTTAAGGAAT
* * * ** * ** *
488 CGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAACTTCAAAAGTACGGCCAAGAACCAAGAGAGA
1 CGAAGTTGTGAAAGAACTC-AAAAATTTTGAAATTTTCGAAAGTTTGACCAAGAACCAAGAGAGA
** * *
553 AACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCAAAAGTTTTTTACAAATGGACAAACTA
65 AACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAATGGACAAACTA
** * *
618 TTTGGACCAAATGGTGCGATTTCCCGAGGCTAGAATGCTTGAAAAATTGCTTGAAAGGATCAATC
130 TTTGGACCAAATGGTGCGATTTCCCGAGAATAGAATGCTTGAAAAATTGATTGAAAGAATCAATC
* * * *** *
683 ATCTTGAATACTTTAAAGAACTGGAGTTATAAAAGAACTCGAAAAAGTTTGTCAAGTTCGGAAGT
195 ATCTTAAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTAAAAAGTTCGAAAGT
* * * * *
748 TCGGCAAAGAACCAAGAGCGAACAATTGTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTT
260 TCAGCAAAGAACAAAGAGAGAACAATTCTCACATAAATAAGCTTTTAATCCAAAGACCAAAAGTT
* * * *
813 CTTTACAAAATGACAGATTATTTGGACCAAGGGATGCGATTTCCCGAGAATGTAATGTTCGAAAA
325 CTTTACAAAAGGACAAACTATTTGGACCAAGGGATGCGATTTCCCGAGAATGGAATGTTCGAAAA
* * * *
878 ATTGCTCGAAGGAATCGATCATCTTTAATACTTTAAGGGAACGAAGTTATACAAGAACTCAAAAA
390 ATTGCCCGAAGGAATCGATCATCTTGAATACTTTAAGAGAACGAAGTTATAAAAGAACTCAAAAA
* * * ** *
943 GTTTTAAAAGTTCAGAAGTTCGGCCAAGAACTAAGAGAGAAACCATTCTCACGTAAATAATTTTT
455 GTTTGAAAAGTTCAGAAGTTCGGCCAAGAACGAAGAGAGAAACAATTCTCAAATAAATAAGTTTT
* * * * * **
1008 TAATTCAAATACCGAAAGTTTTTTACTAATGGACAAAGTATTTGGACCAAATGATGTGATTTTTC
520 TAATCCAAAAACCGAAAATTCTTTACAAATGGACAAAGTATTTGGACCAAATGATGTGATTTCCC
* * * *
1073 GAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATCGATCCTCTTGAAAACTTTAAGGAACCGAA
585 GAGAATGGAATGTTTCAAAAATTGCTCGAAGGAATCGATCATCTTGAAAACTTTAAGAAACCGAA
* * *
1138 GTTTTAAAAAAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCACCCAAGAACCAAGAGAGAAACA
650 GTTATAAAAAAACTCGAAAAAGTTTGAAAAGTTCAGAAGTTCACCCAAGAACCAAGAGAGAAACA
* * * * *
1203 ATTCTCACATAAATTAGTTTTTAATCCAAAGACTAAAAGTTGTTTACAAAATGACAAATTATTTG
715 AGTCTCACATAAATAAGTTTTTAATCCAAAGACTAAAAGTTGTTTACAAAAGGACAAACTATGTG
* * * * ** *
1268 GACCAAATGATGCGATTTCTTGAGAATGAAATGTTCGAAAAATTGCTTGAAGGAAAGGAAC
780 GACCAAATGATGCAATTTCTCGAGAATGAAATGTTCGAAAAAGTACTCAAAGGAAACGAAC
1329 CGAAGTTGTGAAAGAACTCAAAAAATTTTGAAATTTTCGAAAGTTTGACCAAGAACCAAGAGAGA
1 CGAAGTTGTGAAAGAACTC-AAAAATTTTGAAATTTTCGAAAGTTTGACCAAGAACCAAGAGAGA
* * ** *
1394 AATAATTCTCACATAAATAAGTTTTTAATCCAATGACAAAAAGTTGTTTACAAAAT-GACTGATT
65 AACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTAC-AAATGGACAAACT
* * * * * *
1458 ATTTTGGACCAAA-GGCTGTGATTTCTCGATAATGGAAT-TTTCGAAAAATT-ATTCGAAATAAT
129 A-TTTGGACCAAATGG-TGCGATTTCCCGAGAATAGAATGCTT-GAAAAATTGATT-GAAAGAAT
** * * * * *
1520 GGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGGACTCGAGAAAGTTTAAAAAGTTTG
190 CAATCATCTTAAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTAAAAAGTTCG
* * *
1585 AAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGATCA
255 AAAGTTCAGCAAAGAACAAAGAGAG-AACAATTCTCACATAAATAAGCTTTTAATCCAAAGACCA
* * * * * **
1650 AAAGTTTTTTACAAAAGGACAAACTGTTTGGACCAAATGG-TGTGATTTCCCTAGGCTGGAATGT
319 AAAGTTCTTTACAAAAGGACAAACTATTTGGACC-AAGGGATGCGATTTCCCGAGAATGGAATGT
* * *
1714 TTGGAAAATTGCCC-AGAGGAATCGATCGTCTTGAATACTTTAA-AGAACCGAAGTTATAAAAGA
383 TCGAAAAATTGCCCGA-AGGAATCGATCATCTTGAATACTTTAAGAGAA-CGAAGTTATAAAAGA
* * *
1777 ACTCAAAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAACGAAGAGA-AAA-AATTCTCAAATA
446 ACTC-AAAAAGTTTGAAAAGTTCAGAAGTTCGGCCAAGAACGAAGAGAGAAACAATTCTCAAATA
* *
1840 AATAAGTTTTTAATCCAAAAACC-AACAATTCTTTACAAAAT-GACATATTATTTGGACCATAA-
510 AATAAGTTTTTAATCCAAAAACCGAA-AATTCTTTAC-AAATGGACAAAGTATTTGGACCA-AAT
* *
1902 GATGTGATTTCCCGAGAATGGAATG-TTCAAAAATTTGCTCGAAGGAATGGATCATCTTGAATAC
572 GATGTGATTTCCCGAGAATGGAATGTTTCAAAAA-TTGCTCGAAGGAATCGATCATCTTGAAAAC
* ** * ***
1966 TTTAAGAAACTGAAGTTATAAAGGAACTTGAAAAAGTTTGAAAAGTTCAGAAGTTTGGCCAAGAA
636 TTTAAGAAACCGAAGTTATAAAAAAACTCGAAAAAGTTTGAAAAGTTCAGAAGTTCACCCAAGAA
* * * * **
2031 CCAAGAGAGAAATC-AGTCTCACATAAATAAGTTTTTAATTCAAAGATTGAAAGTTTTTTTGAAA
701 CCAAGAGAGAAA-CAAGTCTCACATAAATAAGTTTTTAATCCAAAGACTAAAAGTTGTTTACAAA
* * *
2095 GGGACAAACTA-GTGGACCAAATGATGCAATTTCTCGAGCATGGAATGTTC-AGAAAAGTACTCA
765 AGGACAAACTATGTGGACCAAATGATGCAATTTCTCGAGAATGAAATGTTCGA-AAAAGTACTCA
2158 AAGGAA
829 AAGGAA
2164 TCGATCCTCT
Statistics
Matches: 696, Mismatches: 123, Indels: 32
0.82 0.14 0.04
Matches are distributed among these distances:
840 1 0.00
841 168 0.24
842 339 0.49
843 146 0.21
844 42 0.06
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (840 bp):
CGAAGTTGTGAAAGAACTCAAAAATTTTGAAATTTTCGAAAGTTTGACCAAGAACCAAGAGAGAA
ACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAATGGACAAACTAT
TTGGACCAAATGGTGCGATTTCCCGAGAATAGAATGCTTGAAAAATTGATTGAAAGAATCAATCA
TCTTAAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTAAAAAGTTCGAAAGTT
CAGCAAAGAACAAAGAGAGAACAATTCTCACATAAATAAGCTTTTAATCCAAAGACCAAAAGTTC
TTTACAAAAGGACAAACTATTTGGACCAAGGGATGCGATTTCCCGAGAATGGAATGTTCGAAAAA
TTGCCCGAAGGAATCGATCATCTTGAATACTTTAAGAGAACGAAGTTATAAAAGAACTCAAAAAG
TTTGAAAAGTTCAGAAGTTCGGCCAAGAACGAAGAGAGAAACAATTCTCAAATAAATAAGTTTTT
AATCCAAAAACCGAAAATTCTTTACAAATGGACAAAGTATTTGGACCAAATGATGTGATTTCCCG
AGAATGGAATGTTTCAAAAATTGCTCGAAGGAATCGATCATCTTGAAAACTTTAAGAAACCGAAG
TTATAAAAAAACTCGAAAAAGTTTGAAAAGTTCAGAAGTTCACCCAAGAACCAAGAGAGAAACAA
GTCTCACATAAATAAGTTTTTAATCCAAAGACTAAAAGTTGTTTACAAAAGGACAAACTATGTGG
ACCAAATGATGCAATTTCTCGAGAATGAAATGTTCGAAAAAGTACTCAAAGGAAACGAAC
Found at i:3557 original size:24 final size:24
Alignment explanation
Indices: 3530--3575 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
3520 TCTCTTATTA
*
3530 ATTTGCTCTAACATTTTATATTTC
1 ATTTGCACTAACATTTTATATTTC
*
3554 ATTTGCACTGACATTTTATATT
1 ATTTGCACTAACATTTTATATT
3576 CTTAACCAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (24 bp):
ATTTGCACTAACATTTTATATTTC
Found at i:4526 original size:216 final size:215
Alignment explanation
Indices: 4082--5273 Score: 1298
Period size: 216 Copynumber: 5.6 Consensus size: 215
4072 ACGATTTCCC
* * * *
4082 AAGAATCGATTGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGTACTCGTAAAAGTTTGACA
1 AAGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACA
* * *
4147 AGTTCGGAAGTTCGGCC-AAGAACCAAGA-GAAACAATTCTCACATAAATAATTTTTTAA-TCCA
66 AGTTCGGAAGTTCGGCCTAA-AACCAAGAGGAAATAATTCTCACATAAATAAATTTTTAATTCAA
* * ** *
4209 AGAATCAAAAGTTGTTTACAAAATGACAGATTATTAGGACCAAATGATGCTTTTTCCCGAGAACG
130 AG-ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATG
* *
4274 GAATG-TCTGAAAAATTTTTCGAC
194 GAATGTTC-GAAAAATTGTTC-AA
* * * *
4297 AA-AATGGATCGTCTTCAATACTTTAAGGAACCAAAGTTTTAAAAGAACTCAAAAAAGTTTG-CA
1 AAGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAC-
* * * * * *
4360 AAGTTTGGAAGTTTGACCTAAAACCAAGAGTGAAATAATTATCACGTAAATAAGTTTTTAATTCA
65 AAGTTCGGAAGTTCGGCCTAAAACCAAGAG-GAAATAATTCTCACATAAATAAATTTTTAATTCA
* * * *
4425 AAGACCAAAACTTTTTTACAAAA-GTACTA-ATTATTTGGACCAAATGATGCGATTTCCAGATAA
129 AAGACCAAAAGTTGTTTACAAAATG-AC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAA
* * *
4488 TGGAATTTTCGGAAAACTGTTCAA
192 TGGAATGTTCGAAAAATTGTTCAA
* * * *
4512 AAGAATCGATCGTCTTGAATACTTCAAGGAATCAAAGTTATAAAAGTACTCAAAAAAGTTTGACA
1 AAGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACA
* * * *
4577 AGTTCGGAAGTTCGGCCAAAAACCAAGA-GAAAAAATTCTCACATAAATAAATTTTTAATCCAAC
66 AGTTCGGAAGTTCGGCCTAAAACCAAGAGGAAATAATTCTCACATAAATAAATTTTTAATTCAAA
* *
4641 GACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCAATTTCCCAAGAATGGA
131 GACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
* *
4706 ATGTTCG-AAAGTATGTTC-G
196 ATGTTCGAAAAAT-TGTTCAA
* * * *
4725 AAGAAATAGATCATCTTGAATACTTTAAAGAACCAAAGTTATAAAAGAACTCGGAAAAGTTTG-C
1 AAG-AATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAC
* * * * * *
4789 AAAGTTTGGAAGTTCGGCCTATAGCCTAGAGTGAAATAATTCTCGC----GT--ATTTTTAATTC
65 -AAGTTCGGAAGTTCGGCCTAAAACCAAGAG-GAAATAATTCTCACATAAATAAATTTTTAATTC
* *
4848 AAAGATCAAAAGGTT-TTTACAAAAGGACTA-ATTA-TTGGACCAAATGATGCGATTTCCCGAGA
128 AAAGACCAAAA-GTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGA
*
4910 ATGGAATGTTCGAAAAATTGCTCAA
191 ATGGAATGTTCGAAAAATTGTTCAA
* * * * *
4935 AAGAATTGATCGTCTTGAACACTTTAAGGAACCGAAGATATAAAAGTACTCGAAAAAGTTTGACA
1 AAGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACA
* ** * * *
5000 AGTTCGGAAGTGCAACC-AAGAACCAAGAGAGAAACAATTCTCACATAAATAAAATTTTAATCCA
66 AGTTCGGAAGTTCGGCCTAA-AACCAAGAG-GAAATAATTCTCACATAAATAAATTTTTAATTCA
* *
5064 AAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGCACCAAATGATGCGATTTCCCGAGAACG
129 AAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATG
*
5129 GAATGTTCGAAAAATTGCTTGAA
194 GAATGTTCGAAAAATTG-TTCAA
* * * * * * *
5152 GA-AATGGATCGCCTTAAAAACTTTAAGGACCCAAAGTTATAACAGAACTCGAAAAAGTTTGTA-
1 AAGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AC
* * * ** *
5215 AAGTTCGAAAGTTTGGCCTAGAACCAAGAGAGAAATAATTCTCATGTAAATAAGTTTTT
65 AAGTTCGGAAGTTCGGCCTAAAACCAAGAG-GAAATAATTCTCACATAAATAAATTTTT
5274 TACAAAAGCA
Statistics
Matches: 813, Mismatches: 129, Indels: 69
0.80 0.13 0.07
Matches are distributed among these distances:
208 1 0.00
209 126 0.15
210 43 0.05
211 4 0.00
212 1 0.00
213 10 0.01
214 249 0.31
215 44 0.05
216 320 0.39
217 15 0.02
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (215 bp):
AAGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACA
AGTTCGGAAGTTCGGCCTAAAACCAAGAGGAAATAATTCTCACATAAATAAATTTTTAATTCAAA
GACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
ATGTTCGAAAAATTGTTCAA
Found at i:5376 original size:410 final size:410
Alignment explanation
Indices: 4084--15818 Score: 7524
Period size: 410 Copynumber: 27.7 Consensus size: 410
4074 GATTTCCCAA
* * * *
4084 GAATCGATTGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGTACTCGTAAAAGTTTGACAAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
*
4149 TTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAATTTTTTAATCC-AAG
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
* * ** *
4211 AATCAAAAGTTGTTTACAAAATGACAGATTATTAGGACCAAATGATGCTTTTTCCCGAGAACGGA
131 -ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
** * *
4276 ATG-TCTGAAAAATTTTTCGACA-AAATGGATCGTCTTCAATACTTTAAGGAACCAAAGTTTTAA
195 ATGTTC-GAAAAATTGCTCGA-AGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * * * * * *
4339 AAGAACTCAAAAAAGTTTG-CAAAGTTTGGAAGTTTGACCTAAAACCAAGAGTGAAATAATTATC
258 AAGAACTCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTC
*
4403 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTTTTTACAAAAGTACTAATTATTTGGACCAA
322 ACGTAAATAAG-TTTT--TT-----A-CAAAA------T------GCACTAATTATTTGGACCAA
* * * * * * *
4468 ATGATGCGATTTCCAGATAATGGAATTTTCGGAAAACTGTTCAAAA
366 ATGATGCGATTTCCCGAGAATGGAATGTTC-GAAAAATTTTCGAAG
* * * *
4514 GAATCGATCGTCTTGAATACTTCAAGGAATCAAAGTTATAAAAGTACTCAAAAAAGTTTGACAAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
* *
4579 TTCGGAAGTTCGGCCAAAAACCAAGAGA-AAA-AATTCTCACATAAATAAATTTTTAATCCAACG
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
* *
4642 ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCAATTTCCCAAGAATGGAA
131 ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAA
* * * * *
4707 TGTTCG-AAAGTATGTTCGAAGAAATAGATCATCTTGAATACTTTAAAGAACCAAAGTTATAAAA
196 TGTTCGAAAAAT-TGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * * * * * *
4771 GAACTCGGAAAAGTTTG-CAAAGTTTGGAAGTTCGGCCTATAGCCTAGAGTGAAATAATTCTCGC
260 GAACTCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCAC
*
4835 GTATTTTTAATTCAAAGATCAAAAGGTTTTTACAAAA-GGACTAATTA-TTGGACCAAATGATGC
324 GTA-----AA-T--AAG-T-------TTTTTACAAAATGCACTAATTATTTGGACCAAATGATGC
* * *
4898 GATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCAAAA
373 GATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * * * *
4937 GAATTGATCGTCTTGAACACTTTAAGGAACCGAAGATATAAAAGTACTCGAAAAAGTTTGACAAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
* ** *
5002 TTCGGAAGTGCAACCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAAATTTTAATCCAAAG
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
* *
5067 ACCAAAAGTTGTTTACAAAATGACAGATTATTTGCACCAAATGATGCGATTTCCCGAGAACGGAA
131 ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAA
* * * * * *
5132 TGTTCGAAAAATTGCTTGAAGAAATGGATCGCCTTAAAAACTTTAAGGACCCAAAGTTATAACAG
196 TGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * *
5197 AACTCGAAAAAGTTTGTA-AAGTTCGAAAGTTTGGCCTAGAACCAAGAGAGAAATAATTCTCATG
261 AACTCGAAAAAGTTTG-ACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCACG
* **
5261 TAAATAAGTTTTTTACAAAA-GCACTAACTATTTGGACCAAATGATGCGATTTTTCGAGAATGGA
325 TAAATAAGTTTTTTACAAAATGCACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
* *
5325 ATGCTCAAAAAATTTCTCGAAG
390 ATGTTCGAAAAATTT-TCGAAG
* * * * * *
5347 GAATCGAACGTGTTGAATACTTTAAGGAACCGAAGCTATAAAAGGACTTC-AAAAAGTTTGACTA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC-TCGAAAAAGTTTGACAA
** * * * * *
5411 GTTCAAAAGTTCGGCCAAGAACTAAGAGAGAAACATTTCTCAAATAAATAAATTATTAATCTAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
* * * ** * *
5476 GATCAAAAGTTGTTTACAAAATGACTGATTATTTAGACCAAATGATGCGATTTCTTGAGAACGAA
130 GACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
* * * * *
5541 ATGTTCAAAAAATTGTTCGAAGAAATTGATCGTCTTGAATACTTTATGGAATCAAAGTTATAAAA
195 ATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * *
5606 GAACTCGAAAAAGTTTGTA-AAGTTTGGAAGTTTGGCCTAGAACCAAGATAGAAATAATTCTCAC
260 GAACTCGAAAAAGTTTG-ACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCAC
* * * *
5670 GTAAATAAGTTTTCTACAAAA-GGACTAACTATTTGGATCAAATGATGCGATTTCCCGAGAATGG
324 GTAAATAAGTTTTTTACAAAATGCACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGG
* * *
5734 AATGCTT-GGAAAATTGCTCGAAA
389 AATG-TTCGAAAAATT-TTCGAAG
* * *
5757 GAATCGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGAAAAAGTTTAACAAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
* *** *
5822 TTCGGAAGTTCGACCAAGAACCAAGAGAGAAATGTTTCTCACATAAATACATTTTTAATCCAAAG
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
* * * * *
5887 ACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAATTGATACGATTT--CTACAA---AA
131 ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAA
* * * * *
5947 ----CG-GAAA-TGTTCGAAAAAATGGTTCGTCTTGAATACTTTAAGGAACCCAAGTTATAAAAG
196 TGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * ** * * * *
6006 AACACAAAAAAGTTTG-CAAAGTTTGGTTGTTCAGCCTAGAACCAAGAGTGAAATAATTCTTACG
261 AACTCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCACG
*
6070 TAAATAAGTTTTTAATTCAAAGACCGAAAGTTTTTACAAAATG-ACTAATTATTTGAACCAAATG
325 TAAATAAG--------T-------------TTTTTACAAAATGCACTAATTATTTGGACCAAATG
* * ** *
6134 ATGCGATTTCCCAAGAATGGAATGTTTGAAAAAATGCTCGAAA
369 ATGCGATTTCCCGAGAATGGAATGTTCG-AAAAATTTTCGAAG
** * *
6177 GAATCGATCGTCTTGAATACTTTAAGGAACTGAGGTTATAAAAGTACTCGAAAAAGTTTGACAAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
*
6242 TTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAAATTTTTAATCC-ATG
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
* ** * *
6304 AACCAAAAGTTGTTTACAAAATGACAGATTATTAGGACCAAATGATGCTTTTTCCAGAGAACGGA
131 -ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
* * * *
6369 ATGTTTGAAAAATTGTTTGACGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGATT-TAAA
195 ATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAG-TTATAAA
* * * * * *
6433 ATAACTCAAAAAAGTTTG-CAAAGTTTGGAAGTTCGGCCTAGAACCAAGAGTGAAATAATTATCA
259 AGAACTCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCA
* * *
6497 CATAAAAAAGTTTTTAATTCAAAGATCGAAAGATTTTTACAAAAGTACTAATTATTTGGACCAAA
323 CGTAAATAAG-TTTT--TT-----A-C-AAA-A----T------GCACTAATTATTTGGACCAAA
* * * * * * ** *
6562 TGATGCGATTTTCAGAAAATAGAATTTTCGGAAAACTGCTCGACG
367 TGATGCGATTTCCCGAGAATGGAATGTTC-GAAAAATTTTCGAAG
* ** * * *
6607 GAATCGATCATCTTGAATACTTTAAGGATTCGAAGTTATAAAAGTACTCAAAAAAGTTTGACAAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
* * * *
6672 TTTGGAAGTTCAGCCAAGAACC-A-AGAGAAACAATTCCCACGTAAATAAATTTTTAATCCAAAG
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
* * *
6735 ACCAAAAGTAGTTTACAAAATGACAAATTATTTGGACCAAATGATGCAATTTCCCGAGAATGGAA
131 ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAA
* * * * *
6800 TGTTCGAAAAATTG-TCCAAAGAAATAGATCATCTTGAATACTTTAAAGAACAAAAGTTATAAAA
196 TGTTCGAAAAATTGCT-CGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * * * *
6864 GAACTCGAAAAAGTTTG-CAAAGTTTGGAAGTTCAGCCTAGAGCCTAGAGTGAAATAATTCTCAC
260 GAACTCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCAC
*
6928 ATAAATAAGTTTCTAATTCAAAGATCGAAAGTTTTTTACAAAA-GGACTAATTATTTGGACCAAA
324 --------G--------T--AA-AT---AAGTTTTTTACAAAATGCACTAATTATTTGGACCAAA
* * * *
6992 TGATGC-AGTTTCTCGAGAACGGAATGTTCAAAAAATTGTTTGAAG
367 TGATGCGA-TTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
** * * * * *
7037 GAATTAATCATCTTGAATACTTTAAGGAACCGAA-TATATAATAGTACTCGAAAAAGTTGGACAA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGT-TATAAAAGAACTCGAAAAAGTTTGACAA
** * ** * *
7101 GTTCAAAAGTGCAACCAAGAACCAAGAGAGAAACAATTATCACATAAATAAAATTTTAATCCAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
*
7166 GACCAAAAGTTGTTTACAAAATGACAGATTATTTGTACCAAATGATGCGATTTCCCGAGAATGGA
130 GACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
* * * * * * * *
7231 ATGCTCAAAAAATTGCACGAAGTAATCGATCGTGTTGAATA-TTTAAGGAACCGAAGCTATAAAA
195 ATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * *** *
7295 GAACTTGAAAAAGTTTGACTACTTCGGAAGTTCGG-CTAAGAACCAAGAGAGAAATGTTTCTCAT
260 GAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCT-AGAACCAAGAGAGAAACAATTCTCAC
* * * **
7359 ATAAATAAATTTTTAATCTAAAGACAAAAAGTTGTTTACAAAATGACAAATTATTCAGACCAAAT
324 GTAAAT-AAGTTTT--T-T----AC-AAAA--TG----C------ACTAATTATTTGGACCAAAT
* *
7424 GATGCGATTTCCCGAGAACGAAATGTTCGAAAAATTGTTCGAAG
368 GATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* ** * *
7468 AAATTAATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGAAAAAGTTT-ATAAA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-CAA
* * * * *
7532 GTTCGGAAGTTTGGCCTAGAACCAAGAGAGAAATAATTCTCACGTAAATATATTTTT--T-----
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
* *
7590 -A-CAAAAG--G---AC----T---A-ACTATTTGGACCAAATGATGTGATTTCCCGAGAATGGA
130 GACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
* * * * *
7640 ATGCTCGGAAAATTGCTCGAAAGAACT-GATTGTCTTGAATACTTTAAGGAACCGAAG-TAGTAA
195 ATGTTCGAAAAATTGCTCG-AAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTA-TAA
* * * * * * * **
7703 AAGAACTTGAAAAAGTTTGACAGGCTCGAAAGTT-AGACTAAGAACCAAGAGAAAAACGTTTCTC
258 AAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCT-AGAACCAAGAGAGAAACAATTCTC
* * *
7767 ACATAAATAAATTTTTAATCCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAA
322 ACGTAAATAAGTTTTT--T------A-CAAAA--TG----C--ACT---A-ATTATTTGGACCAA
* *
7832 ATGATGCGATTTCCCGAGAACGGAATGTTTGAAAAATTATTCGAAG
366 ATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * * *
7878 AAATTGATCGTCTTGAACACTTTAAGGAACCAAAGTTATAAAAGAACTCAAAAAAGTTTG-CAAA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAC-AA
* * * * * * * * * **
7942 GTTTGGCAGTTCAGCCTAGAACCAAGAGTGAAATAATTCTCACGTAAATAAGTTTTAAATTGAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
* * * * * *
8007 GATCGAAAGTTTTTTTACAAAAGGACTA-ATTATTTGGACCAAATGATGCGATTTCCCAAGAACG
130 GACCAAAAG-TTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATG
* * * **
8071 GAATGTTCAAAAAATTGCTCGAA-AGAATCGATCGTCTTTAATACTTTAAGGAACTGAAGTTATA
193 GAATGTTCGAAAAATTGCTCGAAGA-AATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATA
* * * * *
8135 AATGTACTTGAAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTC
257 AAAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTC
* * * *
8198 ACATAAATAAATTTTTAATCCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACAAA
322 ACGTAAATAAGTTTTT--T------A-CAAAA--TG----C--ACT---A-ATTATTTGGACCAA
* * *
8263 ATGATGCAATTTCCCGAGAACGGAATGTTCTAAAAATTGTTCGAAG
366 ATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * * * **
8309 AAATGGATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAACTGTTTG-CAAA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAC-AA
* * * * * **
8373 G-T---AAGTTCGGCCTAGAACCATGAGTGAAATAATTCTCACATAAATAAGTTTTTAATTTAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
* * * * *
8434 GACCGAAAGTTTTTTACAAAAGGACTA-ATTATTTGGGCCAAATGATGCGATATCCC-AGGAATG
130 GACCAAAAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGA-GAATG
* * ** * * * * *
8497 AAATG-CCTTAAAATTGCTCGAAGGAATCGATCGTCTTGAATTCTTTAAGGAACCGAAGATATAA
193 GAATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * *
8561 AAGTACTCGACAAAGTTTGACAAGTTCGGAAGTTCAGG-CAAGAACCAAGAGAGAAACAGTTCTC
258 AAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTC-GGCCTAGAACCAAGAGAGAAACAATTCTC
* * * * *
8625 ACATAAATAAAATTTTAATCCAAAGACCAAAAGTTGTTTA-TAAAATGACAGAATATTTGTACCA
322 ACGTAAAT-AAGTTTT--T-----TA-CAAAA--TG--CACT--AAT-------TATTTGGACCA
*
8689 AATGATGCGATTTCCC-AGAACGGAATGTTCGAAAAATTGTTCGAAG
365 AATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * * * *
8735 AAAT-GAATCATCTTGAATACTTTAAGGAACCAAAGTTTTAAAAAAAACTCGAAGAAGTTTGTA-
1 GAATCG-ATCGTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAAGAACTCGAAAAAGTTTG-AC
* * * * *
8798 AAGTTCGGAAG-TCTGGCCTAGAACGAATAGAGAAATAATTCTCACATAAATAAGA-TATT--T-
63 AAGTTCGGAAGTTC-GGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAA-ATTTTTAATC
* * *
8858 -----A-CAAAAG--G---AC----T---A-ACTATTTGGATCAAGTGATGCGATTTCCCGAGAA
126 CAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAA
* * * * * * * *
8904 TGGAATGCTC-AGAGAATTGCTCGAAGGAATCGATCGTCTTGAATACTCTAAGCAACCGAAGCTA
191 TGGAATGTTCGA-AAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTA
* * * * *
8968 TAAGAGAACTTGAAAAAGTTTGACTAGTTCGGAAGTTTGGCCAAGAACCAAGAGAGAAAC-ATTC
255 TAAAAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTC
* * * * * *
9032 TCCCATAAATAAATTTTTAATCCAAAGACCAAAAGTTGTTTACAAAATAACAGATTTTTTGGAAC
320 TCACGTAAATAAGTTTTT--T------A-CAAAA--TG----C--ACT---A-ATTATTTGGACC
* ** * * *
9097 TAATGATG-GATTTCTTGAGTACGGAATGTTCGAAAAATTGTTTGAAG
364 AAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * *
9144 AAATTGATCGTCTTGAATACTTTAAGGAACTAAAGTTATAAAAGAACTCGAAAAAGTTTG-CAAA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAC-AA
* * * * * * * * *
9208 GCTT-GGCAGTTCAGCCTAGAACCAAGAGTGAAACAATTCTCACGTAATTAAGTTTTTGATTCAA
65 G-TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAA
* * * * * * *
9272 AGACTAAAAGTTTTTTTACAAAAGGACTCG-TTATTTGGAAC-AATGATGCGATTTCCCAATAAT
129 AGACCAAAAG-TTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAAT
* * **
9335 GGAATGTTCGAAAAATTGCAT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACTTAAGTTAT
192 GGAATGTTCGAAAAATTGC-TCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAT
* * * *
9399 AAACGTACTCGAAAAAGTTTGACAAGTTCTGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCT
256 AAAAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCT
* * *
9462 CACATAAATAAATTTTTAATCCAAGAACCAAAAGTTGTTTACAAAATGAGAGATTATTTGGACCA
321 CACGTAAATAAGTTTTT--T------A-CAAAA--TG----C--ACT---A-ATTATTTGGACCA
* *
9527 AATGATGCGATTTCCCGAGAATGGAATGTTCGACAAATTGTTCGACG
365 AATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * *
9574 AAATGGATCGTCTTGAATACTTTAAGAAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-CAAT
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAA-
* * * * * * * *
9638 GTTTGGAAGTTCGGCCTAGAACCAAGAGTGAAATAATTATCACATAACTAAGTTTTTAATTCAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
* * * * ** *
9703 TACCGAAAGTT-TTTACAAAATGACTA-ATTATTTGGACCGAATGATGAGATTTCTAGAAAATGG
130 GACCAAAAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGG
* * * *
9766 AATGTTCGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAAGGAACCGACGTTATAAA
194 AATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAA
* * * *
9831 AGTACTCAAAAAAGTTTGACAAGTTCGGAAGTTCGACCAAGAACC-A-AGAGAAACAATTCTCAC
259 AGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCAC
* * * * * *
9894 ATAAATAAATTCTTAATCCAAAGACCAAAAGTTGTTTAAAAATTGACAGATTATTTAGACCAAAT
324 GTAAATAAGTT-TT--T-----TA-CAAAA--TG------CACT---A-ATTATTTGGACCAAAT
* * * *
9959 GCTGCAATTTCTCGAGAACGGAATGTTCGAAAAATTGTTCGAAG
368 GATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * * * * *
10003 AAATGGATCATCTTGAATACTTTAAGGAGCAAAAGTTATAAAAGAACTCGAAAAAG-TTCACGAA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAC-AA
* * * * * * * *
10067 G-T---AAGTTCGGCCTAGAACCACGAGTGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
* *
10128 GACCGAAAGTT-TTCTACAAAAGGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAATG
130 GACCAAAAGTTGTT-TACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATG
* * ** ** * * *
10191 GAATGTTCAAAAAATTGCTCGAAGGAATCTATAATCTCG-ATACTTTAAGGAACCGAAGATATAA
193 GAATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * *
10255 AAGTACTCGAAAAAGTTTGACAAGTTCAGAAGTTCAGCCAAGAACCAAGAGAGAAACAATTCTCA
258 AAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCA
* *
10320 CATAAATAAAATTTTAATCCAAAGACTTAAAGTTGTTTACAAAATG-AC-AGATTATTTGTACCA
323 C----GT---A----AAT---AAG---T----TT-TTTACAAAATGCACTA-ATTATTTGGACCA
* * * * *
10383 AATGATGCGATTTTCTGAGAACGAAACGTTCGAAAAATTGTTCGAAG
365 AATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * * * *
10430 AAATGGATCGTCTTGAATACGTTAAGGAACCAAAGTTATAAAAAAAACTCAAAAAAGTTTGTA-A
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAAGAACTCGAAAAAGTTTG-ACA
* * * * * *
10494 AGTTCGGATGTTTGGCCAAAAACAAAGAGAGAAATAATTCTCACATAAATAAGTTTTT--T----
64 AGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAA
* * *
10553 --A-CAAAAG--G---AC----T---A-ACTATTTGAACCAAGTGATGCGATTTCCCGAGAATGG
129 AGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGG
* * * * ** * * * * *
10602 AATGCTTAG-AGAGTTGCTC-AGAGGAATCAATCATCTTGAATAATCTAAGGAACCGAAGCTATA
194 AATG-TTCGAAAAATTGCTCGA-AGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATA
* * * * * * * ** *
10665 AGAGAACTTGAAAAAGTTTGACTAGTTCGGAAGTTCGGTCAAGATCCAAGACAGAAACGTTTCTT
257 AAAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTC
* * * *
10730 ACATAAATAAATTTTTAATCCAAAGACCAAAAGTTGTGTACAAAATAATAGATTATTTGGACCTA
322 ACGTAAATAAGTTTTT--T------A-CAAAA----TG--C-----ACTA-ATTATTTGGACCAA
* ** *
10795 ATAATGCGATTTCTTGAGAACGGAATGTTCGAAAAATTGTTCGAAG
366 ATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * * * *
10841 AAATTGATGGTCTTGAATACTTTAACGAACCAAAGTTATAAAAGAACTCAAAAAAGTTTG-CAAA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAC-AA
* * * * * * * * ** * *
10905 GTTTGGTAGTTCAGCCTAGAGCCAAGGGTGAAATAATTCTCATGTAAATAAGTTTTTAATTCAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
** * * * * *
10970 GACTTAAAGTT-TTTAACAAAAGGACTTG-TTATTTGGACC-AATGATACGATTTTCCAAGAATG
130 GACCAAAAGTTGTTT-ACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATG
* * * * *
11032 GAATGTTCGAAAAATTGCGCGAAGGAATCGATCGTCTTGAATACTTTAAGAAACCGAAGTTATAA
193 GAATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * * * * * *
11097 ACGTACTAGAGAAAGTTTAACAAGTTCTGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCG
258 AAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCA
* *
11160 CATAAATAA-TATTTTAATCCAAGAACCAAAAGTTGTTTACAAAATGAGAGATTATTTGGACCAA
323 CGTAAATAAGT-TTTT--T------A-CAAAA--TG----C--ACT---A-ATTATTTGGACCAA
* *
11224 ATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTGTTCGACG
366 ATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* *
11270 AAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-CAAA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAC-AA
* * * * * * *
11334 GTTTGGAAGTTCGGCCTAGAACCAAGAGTG--A-AA-TGTCACGTAAATAAGTTTTTAATTCAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
* * * ** * *
11395 GACCGAAAGTTTTTTACAAAAGGACTA-ATTATTTGGACCAAATGATGAAATTTCCAGAAAATGG
130 GACCAAAAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGG
* * * *
11459 AATGTTCGAAAAATTGCTCGAATAAATTGATCGTCATGAATACTTTAAGGAACCAAAGTTAAAAA
194 AATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAA
* *
11524 AGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCAC
259 AGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCAC
* * * *
11587 ATAAATAAAATTTTAATCCAAAGACCAAAATTTGTTTACAAAATGACAGATTATTTGGACCAAAT
324 GTAAAT-AAGTTTT--T-----TA-CAAAA--TG----C--ACT---A-ATTATTTGGACCAAAT
** * * *
11652 GATGAAATTTCCTGAGAACGAAATGTTCGAAAAATTGTTCGAAG
368 GATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* ** * * *
11696 AAAAGGATCATCTTGAATACTTTAAGGAGCAAAAGTTATAAAAGAACTCGAAAAAGTTT-ACAAA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAC-AA
* * * * * * * *
11760 G-T---AAGTTCGGCCTAGAACCACGAGTGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
*
11821 GACCGAAAA-TT-TTATACAAAAGGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAAT
130 GACC-AAAAGTTGTT-TACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAAT
* * * * * * * * *
11883 GAAATGTTCAAAAAATTGATCGAAGGAATCGATCGTCTTCAATACTTTAAGGAATCGAAGATATA
192 GGAATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATA
* * * *
11948 AAAGTACTC-AACAAAGTTTGAAAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCT
257 AAAGAACTCGAA-AAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCT
* *
12012 CACAGAAATAAAATTTTAATCCAAAGACCAAAAGTTGTTTACAAAATG-A-TAGATTATTTTGAC
321 CAC-G---T---A----AAT-----------AAGTTTTTTACAAAATGCACTA-ATTATTTGGAC
*
12075 CAAATGATGCGATTTCCCGAGAATGGAATGCTTAG-AAAATTGCTT-GAAG
363 CAAATGATGCGATTTCCCGAGAATGGAATG-TTCGAAAAATT--TTCGAAG
* * * * * * * * *
12124 GAATCGATTGTCTTCAATACTCTATGAAACCGAAGCTATAAAAGAACTTGAAAAAGTTTGACTAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
* * *
12189 TTCGAAAGTTAGGCCAAGAACCAAGAGAGAAAC-ATTACTCACATAAATAAATTTTTAATCCTAA
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATT-CTCACATAAATAAATTTTTAATCCAAA
* *
12253 GACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCTAATGATGCGATTTCCCGAGAACGGA
130 GACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
* * * *
12318 ATGTTCGAAAAATTGTTCGAAAAAATAGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAA
195 ATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * * * *
12383 GAGCTCGAAAAAGTTTG-CAAAGTTTGGAAGTTTGGCCTAGAACCAAGCGAGAAATAATTCTTAC
260 GAACTCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCAC
* * *
12447 GTAAATAAGTTTTTAATTCAAAGACCGAACGTTTTTTACAAAAGGACTAACTATTTGGACCAAAT
324 GTAAATAAG-TTTT--TT----------AC-------A-AAATGCACTAATTATTTGGACCAAAT
* * * * *
12512 GATGCAATTTCTCGAGAATGTAATGTTCAAAAAATTGCTT-GAAC
368 GATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT--TTCGAAG
* * * * *
12556 GAATCGGTAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAAAACTC-AAAAATGCTTGGCAA
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAA-GTTTGACAA
** **
12620 GTTTAGAAGTTCAACCAAGAA--ATA-AGAGAAACAATTCTCACATAAATAAATTTTTAATCCAA
65 GTTCGGAAGTTCGGCCAAGAACCA-AGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAA
* ** *
12682 AGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGTTAAGATTTCCCGAGCATGG
129 AGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGG
* * ** * * *
12747 AATGTTTTG-AAAATTGCTCGAAGGAATGGATTATCTTGTATACTTTAAGGATCCGAAGTTATAA
194 AATG-TTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * * * *
12811 AATAACTC-ATAAAAGTTTGACAAGTTCGAAAGTTCAG--TAAAAACCAAGGGAGAAACCATTCT
258 AAGAACTCGA-AAAAGTTTGACAAGTTCGGAAGTTCGGCCT-AGAACCAAGAGAGAAACAATTCT
* * * * *
12873 CTCGTAAATAAGTTTTTAATTCTAAGACAGAATGTTGTTTACAAAATGACAAACTATTTTGACCA
321 CACGTAAATAAG--TTT--TT-T---ACA-AA--ATG----C------ACTAATTATTTGGACCA
* * * * * * *
12938 AATGATGCTATTTCTCGAGCATGAAATATTCAAAAAATTGGTCGAAG
365 AATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * * ** *
12985 GAAT-GAATCGTCTTGAATACTGTAAGGAATCAAAGCTATAATTGAACTCAAAAAAGTTTGA-AA
1 GAATCG-ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAA
* ** * * * ** * * *
13048 TGTTTGGAAGTTCAACCAAGAACCAAGAGAGAAAGAATACTAATGTTAATAAGTTTTTAATTCAA
65 -GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAA
** * * * * *** * ** **** * *
13113 AGAGTAAAAGTTGTTT--AAAATAACAAACTACTTGGTTGAAATGACGTAATTTTTTTAGCATGA
129 AGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGG
* ** * * * *
13176 AATGGTC-AGAAAATTTTTCGATGGAATGGATCGTCTTGAATACTTTAAAGAACCAAAGTTACAA
194 AATGTTCGA-AAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * * ** * * * * *
13240 AAAAACTTGTAAAAGTTTGACATGTTTAGATGTTCAGCCAAGAGCCAAGAGAGAAACAGTTCTCA
258 AAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCA
* * *
13305 CGTAAATAAATCTTTAATTCAAAGACCAAAAGTTGTTTACGAACTGACTAACTATTTAGACCAAA
323 CGTAAATAAGT-TTT--TT-----A-CAAAA------T--G--C--ACTAATTATTTGGACCAAA
* * ** * * *
13370 TCATGCGACTTCTTGAGCATGGAATGTTC-AAAATTTTGTTAGAAG
367 TGATGCGATTTCCCGAGAATGGAATGTTCGAAAA-ATT-TTCGAAG
* * * * * * *
13415 GAATGGATCATATTGTATACTTTTAAGGGACCGAAGTTA-AAAAGAACTCGTAAAAGTTTGACAA
1 GAATCGATCGTCTTGAATAC-TTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAA
*** * * ** *
13479 GTTCGGAAGTTTAACTAAGAACCAAGAGAGAAATAATTCTCATGTAAATAAGTTTTTAATCCAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
* * *
13544 GACCAAAAGTT-TTTACAAAATAACAGATTATTTGGACCAAATGATGCAATTTCCCGAGAATCGA
130 GACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
* * * * *
13608 TTGTTCGAAAAATTGCTCGAAGGACTGGATCGTCTTGAATACTTTAAGAAACTAAAGTTATAAAA
195 ATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * ** * * *
13673 GAACTTGAAAAAGTTTGAAAAGTTCGGAAGTTAAGCCAAGAACCAAGAGAGAAACAATTCTTACA
260 GAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCACG
* * *
13738 TAAATAAGTTTTTAATTCAAAGACTGAAAGTTTTTTACAAAAGGACAAACTATTTGGACCAAATG
325 TAAATAAGTTTTT--TACAAA-A-T----G-------C------ACTAATTATTTGGACCAAATG
* ** * * ** * * * *
13803 GTATGATTTCTCGA-AGCTAAAATGTTAGGAAAATTGCTCGAAA
369 ATGCGATTTCCCGAGA-ATGGAATGTTCGAAAAATT-TTCGAAG
* * * * *
13846 GAATCTATCATCTTGAATAATTTAAGGAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGACAAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
* * * * * * * *
13911 TTCGGAACTTCGGCGAAGAACGAAGAAAGAAAAAATTCTCACATAAATAAGTTTTTTATTCAAAG
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
* * * * * * * *
13976 ACCGAAAGTTGGTTACAAAAGGATAAAATATTTGGACCAAATGATGCGATTTCTCGAGCATGGAA
131 ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAA
* * * * * *
14041 TGTTTGGAAAATTGCTCGAAGGAATGGATTGTCTTGAATACTTTAGGGAACTGAAA-TTATAAAA
196 TGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAAC-CAAAGTTATAAAA
* * * * * * * * *
14105 TAACTTGTAAAAGTTTGACAATTTCGAAAGCTT-AGTCAAGAACCAATG-GAGAAACCATTCTCA
260 GAACTCGAAAAAGTTTGACAAGTTCGGAAG-TTCGGCCTAGAACCAA-GAGAGAAACAATTCTCA
* *
14168 CGTAAATAAGTTTTTAATTCTAAGACGAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAA
323 CGTAAATAAG--TTT--TT-T---AC-AAAA--TG----C------ACTAATTATTTGGACCAAA
* * * *
14233 TGATGCGATTTACCGAGCATGGAATGTTC-AGATACTTGTTCGAAG
367 TGATGCGATTTCCCGAGAATGGAATGTTCGA-AAAATT-TTCGAAG
* * * *
14278 GAATCGATAGTCATGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAATTTTGACAAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
* * * *
14343 TTCGGAAGTTCGGTCAAGAAACAAGAGAGAAACAATTCTCACAAAAAAAAATTTTTAATCCAAAG
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
* * * * *
14408 ACAAAAAGTTG---------TGATAGATTATTTGGACCAAATGACGGGATTTCCCGATG-ACGGA
131 ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGA-GAATGGA
* * *
14463 ATGTTCGAAAATTTGTTCAAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
195 ATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
** *
14528 GAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCAACCTAGAACCAAGAGAGAAATAATTCTCACG
260 GAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCACG
* *
14593 TAAATAGGTTTTTAATTCAAAGACCAAAAGTGTTTTACAAAATGACTAACTATTTGGACCAAATG
325 TAAATAAG-TTTT--TT-----A-CAAAA-TG-----C------ACTAATTATTTGGACCAAATG
* *
14658 ATGCGATTTCCCGAGAATGGAATGTTTGGAAAA-TTTCATGAAG
369 ATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTTTC--GAAG
* * *
14701 GAATCGATCGTTTTCAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
* * * * *
14766 TTTGGAAGTTCGGCCAAGAACCAATAGAGAAATAATTCTCATATAAATAAATTTTTAATTCAAAG
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
* ** * * * ***
14831 ACCAAAAGTTGTTTACAAAATGACTGGCTATTTGGACCAAATTATGCAATTTCTCGAGAACAAAA
131 ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAA
* * * * *
14896 TGTTCAAAAAATTGTTTGAAGAAATGTATCGTCATGAATACTTTAAGGAACCAAAGTTATAAAAG
196 TGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * *
14961 AACTTGAAAAAGTTTGTA-AAGTTCGGAAGTTTGGCCTAGAACCAAGAGAGAAATAATTCCCACG
261 AACTCGAAAAAGTTTG-ACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCACG
* * * *
15025 TAAATATA-TTTTTTACGAAA-GGACTAACTATTTGGACCAAATGATGAGATTTCCCGAGAATGG
325 TAAATA-AGTTTTTTACAAAATGCACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGG
* * * * *
15088 AATGCTCGGAAAATTGCTCAAAA
389 AATGTTCGAAAAATT-TTCGAAG
* * * * * *
15111 GAA-CTGATCATCTTGAATACTTTAAGGAACCGAAGTAATAAAAGAACTTGAAAAAGTTTGATAG
1 GAATC-GATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAA
** * * **
15175 GTTCAAAAGTTAGACCAAGAACCAAGAGAGAAACGTTTCTCACATAAATAAATTTTTAATCCAAA
65 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAA
* * *
15240 GACCAAAAGTTGTTTACAAACTGACAGATTATTTGGAACAAATGATGCGATTTCCCGAGAACGGA
130 GACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
* * *
15305 ATGTTTGAAAAATTGTTCGAAGAAATGGATCGTCTTGAACACTTTAAGGAACCAAAGTTATAAAA
195 ATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * * * *
15370 GAACTCAAAAAAGTTTG-CAAAGTTTGGCAA-TTCAGCCTAGAACCAAGAGTGAAATAATTATCA
260 GAACTCGAAAAAGTTTGAC-AAGTTCGG-AAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCA
* *
15433 CGTAAATAAGTTTTTAATTCAAAGATCGAAAGTTTTTTTACAAAAGGAATAATTATTTGGACCAA
323 CGTAAATAAGTTTTT--TACAAA-AT-----G--------C------ACTAATTATTTGGACCAA
* *
15498 ATGATGCGATTTCCCAAGAATGGAATGTTCGAAAAATTGCTCGAAG
366 ATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATT-TTCGAAG
* * * * * *
15544 GAATTGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAGGTACTCGAAAAGGTTTGACAAG
1 GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
* *
15609 TTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCATATAAATAAATTCTTAATCCAAAG
66 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
* * * *
15672 ACCAAAAGTTGTTTA-AAAATTGACAGATTATTTAGACCAAATGCTGCAATTTCCCGAGAACGGA
131 ACCAAAAGTTGTTTACAAAA-TGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGA
* * * * *
15736 ATGTTCGAAAAATTGTTCGAAGAAATGGATCATCTTGAATACTTTAAGGAGCAAAAGTTAGAAAA
195 ATGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
15801 GAACTCGAGAATAAGTTT
260 GAACTCGA-AA-AAGTTT
15819 TTAATTCAAA
Statistics
Matches: 9315, Mismatches: 1386, Indels: 1205
0.78 0.12 0.10
Matches are distributed among these distances:
389 2 0.00
390 2 0.00
391 1 0.00
394 1 0.00
397 3 0.00
398 5 0.00
399 108 0.01
400 6 0.00
401 1 0.00
402 2 0.00
403 2 0.00
404 1 0.00
405 2 0.00
406 2 0.00
407 4 0.00
408 78 0.01
409 238 0.03
410 1399 0.15
411 181 0.02
412 11 0.00
413 8 0.00
414 1 0.00
415 3 0.00
416 5 0.00
417 20 0.00
418 89 0.01
419 16 0.00
420 148 0.02
421 17 0.00
422 59 0.01
423 482 0.05
424 25 0.00
425 485 0.05
426 655 0.07
427 259 0.03
428 187 0.02
429 933 0.10
430 1395 0.15
431 1114 0.12
432 1001 0.11
433 266 0.03
434 11 0.00
435 7 0.00
436 4 0.00
437 5 0.00
438 12 0.00
439 9 0.00
440 5 0.00
441 9 0.00
442 4 0.00
443 3 0.00
444 2 0.00
445 3 0.00
446 2 0.00
447 2 0.00
448 4 0.00
449 9 0.00
451 4 0.00
452 3 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (410 bp):
GAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAG
TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAG
ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAA
TGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
AACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTTACAAAATGCACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAA
TGTTCGAAAAATTTTCGAAG
Found at i:5440 original size:194 final size:194
Alignment explanation
Indices: 5095--5853 Score: 488
Period size: 194 Copynumber: 3.8 Consensus size: 194
5085 AATGACAGAT
* * * *
5095 TATTTGCACCAAATGATGCGATTTCCCGAGAACGGAATGTTCGAAAAATTGCTTGAAGAAATGGA
1 TATTTGCACCAAATGATGCGATTTCCCGAGAACGGAATGCTCAAAAAATTGCTCGAAGAAATCGA
* * * * *
5160 TCGCCTTAAAAACTTTAAGGACCCAAAGTTATAACAGAACTCGAAAAAGTTTGTAAAGTTCGAAA
66 ACGCCTTAAAAACTTTAAGGAACCAAAGCTATAAAAGAACTCGAAAAAGTTTGTAAAGTTCAAAA
* * * **
5225 GTTTGGCCTAGAACCAAGAGAGAAATAATTCTCATGTAAATAAGTTTTTTACAAAAGCACTAAC
131 GTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAATAAGTTTTTTACAAAAGCACTAAC
* ** * * *
5289 TATTTGGACCAAATGATGCGATTTTTCGAGAATGGAATGCTCAAAAAATTTCTCGAAGGAATCGA
1 TATTTGCACCAAATGATGCGATTTCCCGAGAACGGAATGCTCAAAAAATTGCTCGAAGAAATCGA
** * * * * *
5354 ACGTGTTGAATACTTTAAGGAACCGAAGCTATAAAAGGACTTC-AAAAAGTTTG-ACTAGTTCAA
66 ACGCCTTAAAAACTTTAAGGAACCAAAGCTATAAAAGAAC-TCGAAAAAGTTTGTA-AAGTTCAA
* * * * * *
5417 AAGTTCGGCCAAGAACTAAGAGAGAAACATTTCTCAAATAAATAAATTATTAATCTAAAG-A-TC
129 AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAATAAGTTTTTTA-CAAAAGCACT-
5480 AA-
192 AAC
* ** * ** * * * *
5482 AAGTTGTTTACAAAATGACTGATTATTTAGACCAAATGATGCGATTTCTTGAGAACGAAATGTTC
1 TA-TT-TGCACCAAATGA-TG-CGATTT---CC---CGA---GA--AC--G-GAATG-----CTC
* * * * * * * * *
5547 AAAAAATTGTTCGAAGAAATTGATCGTCTTGAATACTTTATGGAATCAAAGTTATAAAAGAACTC
43 AAAAAATTGCTCGAAGAAATCGAACGCCTTAAAAACTTTAAGGAACCAAAGCTATAAAAGAACTC
*** * * * * **
5612 GAAAAAGTTTGTAAAGTTTGGAAGTTTGGCCTAGAACCAAGATAGAAATAATTCTCACGTAAATA
108 GAAAAAGTTTGTAAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAATA
* *
5677 AGTTTTCTACAAAAGGACTAAC
173 AGTTTTTTACAAAAGCACTAAC
* * * ***
5699 TATTTGGATCAAATGATGCGATTTCCCGAGAATGGAATGCTTGGAAAATTGCTCGAA-AGAATCG
1 TATTTGCACCAAATGATGCGATTTCCCGAGAACGGAATGCTCAAAAAATTGCTCGAAGA-AATCG
* ** * * * * * **
5763 ATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGAAAAAGTTT-AACAAGTTCGG
65 AACGCCTTAAAAACTTTAAGGAACCAAAGCTATAAAAGAACTCGAAAAAGTTTGTA-AAGTTCAA
*
5827 AAGTTCGACCAAGAACCAAGAGAGAAA
129 AAGTTCGGCCAAGAACCAAGAGAGAAA
5854 TGTTTCTCAC
Statistics
Matches: 430, Mismatches: 101, Indels: 68
0.72 0.17 0.11
Matches are distributed among these distances:
193 5 0.01
194 245 0.57
195 16 0.04
196 2 0.00
197 4 0.01
199 4 0.01
200 1 0.00
203 2 0.00
204 2 0.00
206 2 0.00
207 2 0.00
210 3 0.01
211 4 0.01
213 4 0.01
214 2 0.00
215 15 0.03
216 114 0.27
217 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.27
Consensus pattern (194 bp):
TATTTGCACCAAATGATGCGATTTCCCGAGAACGGAATGCTCAAAAAATTGCTCGAAGAAATCGA
ACGCCTTAAAAACTTTAAGGAACCAAAGCTATAAAAGAACTCGAAAAAGTTTGTAAAGTTCAAAA
GTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAATAAGTTTTTTACAAAAGCACTAAC
Found at i:5677 original size:216 final size:216
Alignment explanation
Indices: 5266--15805 Score: 3376
Period size: 216 Copynumber: 49.6 Consensus size: 216
5256 TCATGTAAAT
* * * *
5266 AAGTTTTTTACAAAAGCACTAACTATTTGGACCAAATGATGCGATTTTTCGAGAATGGAATGCTC
1 AAGTTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCTC
* * * *
5331 AAAAAATTTCTCGAAGGAATCGAACGTGTTGAATACTTTAAGGAACCGAAGCTATAAAAGGACTT
66 AAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACTT
* * *
5396 CAAAAAGTTTGACTAGTTCAAAAGTTCGGCCAAGAACTAAGAGAGAAACATTTCTCAAATAAATA
131 CAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAATA
5461 AATTATTAATCTAAAGATCAA
196 AATTATTAATCTAAAGATCAA
* * *
5482 AAGTTGTTTACAAAATG-ACTGATTATTTAGACCAAATGATGCGATTTCTT-GAGAACGAAATGT
1 AAGTTGTTTACAAAA-GCACTAACTATTTAGACCAAATGATGCGATTT-TTCGAGAACGAAATGC
* * * * *
5545 TCAAAAAATTGT-TCGAAGAAATTGATCGTCTTGAATACTTTATGGAATCAAAGTTATAAAAGAA
64 TCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
*** * * * * **
5609 C-TCGAAAAAGTTTGTA-AAGTTTGGAAGTTTGGCCTAGAACCAAGATAGAAATAATTCTCACGT
128 CTTC-AAAAAGTTTG-ACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAAT
* * *
5672 AAATAAGTT-TT-CTACAAAAGGA-CTAA
191 AAATAAATTATTAAT-CTAAA-GATC-AA
* * ** * * * * **
5698 CTATTTGGAT-CAAATG-A-T-GCGATTT--CCCGAGAATGGAATGCTTGGAAAATTGCTCGAAA
1 -AAGTTGTTTACAAAAGCACTAACTATTTAGACC-A-AAT-G-ATGC---G---ATTTTTCG--A
* ** * * * * * * *
5757 GAATCGATCAT-CT-TGAATACTT-T--AAGGAA-CCAAAGT-TATAAAAGAAC-TT---GAA--
53 GAA-CGA-AATGCTCAAAAAATTTCTCGAAGAAATCGAACGTCT-T-GAA-TACTTTAAGGAACC
* ** * *
5809 AAAG-TTTAACAAG---TTC-GGAAGTTCGACCAAG--A----------------ACCAAGAGAG
113 AAAGCTATAA-AAGAACTTCAAAAAGTTTGA-CAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAG
*** * * * * *
5851 AAATGTTTCTCACATAAATACATTTTTAATCCAAAGACCAA
176 AAACAATTCTCAAATAAATAAATTATTAATCTAAAGATCAA
* * * * * * *
5892 AAGTTGTTTACAAAATG-ACAAATTATTTGGACCAATTGATACGATTTCTAC-AAAACG----G-
1 AAGTTGTTTACAAAA-GCACTAACTATTTAGACCAAATGATGCGATTT-TTCGAGAACGAAATGC
* * * ** * *
5950 -----AAATGT-TCGAAAAAATGGTTCGTCTTGAATACTTTAAGGAACCCAAGTTATAAAAGAAC
64 TCAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
* ***** * * * * * **
6009 -ACAAAAAAGTTTG-CAAAGTTTGGTTGTTCAGCCTAGAACCAAGAGTGAAATAATTCTTACGTA
129 TTC-AAAAAGTTTGAC-AAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATA
* * * *
6072 AATAAGTTTTTAAT-TCAAAGACCGA
192 AATAAATTATTAATCT-AAAGATCAA
* ** * * *
6097 AAGTT-TTTACAAAATG-ACTAATTATTT-GAACCAAATGATGCGATTTCCCAAGAATGGAATGT
1 AAGTTGTTTACAAAA-GCACTAACTATTTAG-ACCAAATGATGCGATTTTTCGAGAACGAAATG-
* * * * ** * * *
6159 TTGAAAAAA-TGCTCGAA-AGAATCGATCGTCTTGAATACTTTAAGGAACTGAGGTTATAAAAGT
63 CTCAAAAAATTTCTCGAAGA-AATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGA
** *
6222 AC-TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACAT
127 ACTTC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAAT
* * * *
6284 AAATAAATTTTTAATC-CATGAACCAA
191 AAATAAATTATTAATCTAAAG-ATCAA
* *
6310 AAGTTGTTTACAAAATG-AC-AGATTA-TTAGGACCAAATGATGC--TTTTTCCAGAGAACGGAA
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTA-GACCAAATGATGCGATTTTT-C-GAGAACGAAA
* ** * * * * * *
6370 TGTTTGAAAAATTGT-TTGACGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGATTTAAAA
61 TGCTCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAA
* *** * * * *
6434 TAAC-TCAAAAAAGTTTG-CAAAGTTTGGAAGTTCGGCCTAGAACCAAGAGTGAAATAATTATCA
125 GAACTTC-AAAAAGTTTGAC-AAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
6497 CATAAA-AAAGTTTTTAAT-TCAAAGATCGA
188 AATAAATAAA-TTATTAATCT-AAAGATCAA
* * * ** *
6526 AAGATT-TTTACAAAAGTACTAATTATTTGGACCAAATGATGCGA-TTTTC-AGAAAATAGAATT
1 AAG-TTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAG-AACGA-AATG
* ** * * * * * * ** * * *
6588 TTCGGAAAACTGCTCGACGGAATCGATCATCTTGAATACTTTAAGGATTCGAAGTTATAAAAGTA
63 CTCAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
*** * * **
6653 C-TCAAAAAAGTTTGACAAGTTTGGAAGTTCAGCCAAGAACC-A-AGAGAAACAATTCCCACGTA
128 CTTC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATA
* * *
6715 AATAAATTTTTAATCCAAAGACCAA
192 AATAAATTATTAATCTAAAGATCAA
* * * * * ** * * *
6740 AAGTAGTTTACAAAATG-ACAAATTATTTGGACCAAATGATGCAATTTCCCGAGAATGGAATGTT
1 AAGTTGTTTACAAAA-GCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * * * * * * *
6804 CGAAAAATTGTC-CAAAGAAATAGATCATCTTGAATACTTTAAAGAACAAAAGTTATAAAAGAAC
65 CAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
*** * * * * * * *
6868 -TCGAAAAAGTTTG-CAAAGTTTGGAAGTTCAGCCTAGAGCCTAGAGTGAAATAATTCTCACATA
129 TTC-AAAAAGTTTGAC-AAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATA
* *
6931 AATAAGTT-TCTAAT-TCAAAGATCGA
192 AATAAATTAT-TAATCT-AAAGATCAA
* * * * * * *
6956 AAGTTTTTTACAAAAGGACTAATTATTTGGACCAAATGATGC-AGTTTCTCGAGAACGGAATGTT
1 AAGTTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGA-TTTTTCGAGAACGAAATGCT
* * * * * ** * *
7020 CAAAAAATTGT-TTGAAGGAAT-TAATCATCTTGAATACTTTAAGGAACCGAATATATAATAGTA
65 CAAAAAATT-TCTCGAAGAAATCGAA-CGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
* * ** * *
7083 C-TCGAAAAAGTTGGACAAGTTCAAAAGTGCAACCAAGAACCAAGAGAGAAACAATTATCACATA
128 CTTC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATA
* *
7147 AATAAAATT-TTAATCCAAAGACCAA
192 AAT-AAATTATTAATCTAAAGATCAA
* ** * *
7172 AAGTTGTTTACAAAATG-AC-AGATTATTT-GTACCAAATGATGCGATTTCCCGAGAATGGAATG
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAG-ACCAAATGATGCGATTTTTCGAGAACGAAATG
* * * * * *
7234 CTCAAAAAATTGCACGAAGTAATCGATCGTGTTGAATA-TTTAAGGAACCGAAGCTATAAAAGAA
63 CTCAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
* * * ** * *** *
7298 CTTGAAAAAGTTTGACTACTTCGGAAGTTCGGCTAAGAACCAAGAGAGAAATGTTTCTCATATAA
128 CTTCAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAA
*
7363 ATAAATTTTTAATCTAAAGA-CAAA
193 ATAAATTATTAATCTAAAGATC-AA
* * * ** *
7387 AAGTTGTTTACAAAATG-ACAAATTATTCAGACCAAATGATGCGATTTCCCGAGAACGAAATGTT
1 AAGTTGTTTACAAAA-GCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * *
7451 CGAAAAATTGT-TCGAAGAAAT-TAATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
65 CAAAAAATT-TCTCGAAGAAATCGAA-CGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
** * ** * * * **
7514 CTAGAAAAAGTTT-ATAAAGTTCGGAAGTTTGGCCTAGAACCAAGAGAGAAATAATTCTCACGTA
128 CTTCAAAAAGTTTGA-CAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATA
* * * *
7578 AATATATTTTTTA-CAAAAGGA-CTAA
192 AATAAATTATTAATCTAAA-GATC-AA
* ** * * ** * ** *
7603 CTA-TT-TGGACCAAATG-A-T--GTGATTT---CCCGA-GAATG-GAATGCTCG-GAA--AATT
1 -AAGTTGTTTA-CAAAAGCACTAACT-ATTTAGACCAAATG-ATGCGATTTTTCGAGAACGAAAT
* * *
7654 GCTCGAAAGAA---CT----G--AT----TGTCTTGAATACTTTAAGGAACCGAAG-TAGTAAAA
62 GCTC-AAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTA-TAAAA
* * * * * * * * ** *
7705 GAACTTGAAAAAGTTTGACAGGCTCGAAAGTTAGACTAAGAACCAAGAGAAAAACGTTTCTCACA
125 GAACTTCAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAA
* * *
7770 TAAATAAATTTTTAATCCAAAGACCAA
190 TAAATAAATTATTAATCTAAAGATCAA
* * ** * *
7797 AAGTTGTTTACAAAATG-AC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAACGGAATGT
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGC
** * * * *
7860 TTGAAAAATTAT-TCGAAGAAATTGATCGTCTTGAACACTTTAAGGAACCAAAGTTATAAAAGAA
64 TCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
**** * * * * **
7924 C-TCAAAAAAGTTTG-CAAAGTTTGGCAGTTCAGCCTAGAACCAAGAGTGAAATAATTCTCACGT
128 CTTC-AAAAAGTTTGAC-AAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAAT
* *
7987 AAATAAGTT-TTAAAT-TGAAAGATCGA
191 AAATAAATTATT-AATCT-AAAGATCAA
* * * * ** * * *
8013 AAGTTTTTTTACAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCAAGAACGGAATGTT
1 AAG-TTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * * ** * * *
8078 CAAAAAATTGCTCGAA-AGAATCGATCGTCTTTAATACTTTAAGGAACTGAAGTTATAAATGTAC
65 CAAAAAATTTCTCGAAGA-AATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
* * *
8142 TTGAAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACATAAA
129 TTCAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAA
* * *
8205 TAAATTTTTAATCCAAAGACCAA
194 TAAATTATTAATCTAAAGATCAA
* * * * ** * *
8228 AAGTTGTTTACAAAATG-AC-AGATTATTTGGACAAAATGATGCAATTTCCCGAGAACGGAATGT
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGC
* * * * * *
8291 TCTAAAAATTGT-TCGAAGAAATGGATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAA
64 TCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
** * * * * *
8355 C-TCGAAACTGTTTG-CAAAG-T---AAGTTCGGCCTAGAACCATGAGTGAAATAATTCTCACAT
128 CTTC-AAAAAGTTTGAC-AAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAAT
* * * * *
8414 AAATAAGTTTTTAATTTAAAGACCGA
191 AAATAAATTATTAATCTAAAGATCAA
* * * * * * * * *
8440 AAGTTTTTTACAAAAGGACTAATTATTTGGGCCAAATGATGCGA-TATCCCAGGAATGAAATGC-
1 AAGTTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGA-GAACGAAATGCT
** * * * * * * *
8503 CTTAAAATTGCTCGAAGGAATCGATCGTCTTGAATTCTTTAAGGAACCGAAGATATAAAAGTAC-
65 CAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACT
* ** * *
8567 TCGACAAAGTTTGACAAGTTCGGAAGTTCAGG-CAAGAACCAAGAGAGAAACAGTTCTCACATAA
130 TC-AAAAAGTTTGACAAGTTCAAAAGTTC-GGCCAAGAACCAAGAGAGAAACAATTCTCAAATAA
* *
8631 ATAAAATT-TTAATCCAAAGACCAA
193 AT-AAATTATTAATCTAAAGATCAA
* * * * *
8655 AAGTTGTTTATAAAATG-AC-AGAATATTT-GTACCAAATGATGCGA-TTTCCCAGAACGGAATG
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAG-ACCAAATGATGCGATTTTTCGAGAACGAAATG
* * * * *
8716 TTCGAAAAATTGT-TCGAAGAAAT-GAATCATCTTGAATACTTTAAGGAACCAAAGTTTTAAAAA
63 CTCAAAAAATT-TCTCGAAGAAATCGAA-CGTCTTGAATACTTTAAGGAACCAAAGCTAT-AAAA
* * ** * * * *
8779 AAAC-TCGAAGAAGTTTGTA-AAGTTCGGAAG-TCTGGCCTAGAACGAATAGAGAAATAATTCTC
125 GAACTTC-AAAAAGTTTG-ACAAGTTCAAAAGTTC-GGCCAAGAACCAAGAGAGAAACAATTCTC
* * *
8841 ACATAAATAAGA-TATTTA-CAAAAGGA-CTAA
187 AAATAAATAA-ATTATTAATCTAAA-GATC-AA
* * ** ** * * ** * ** *
8871 CTATTTGGAT-CAAGTG-A-T-GCGATTT---CCCGA-GAATG-GAATGCTC-AG-A-GAATTGC
1 -AAGTTGTTTACAAAAGCACTAACTATTTAGACCAAATG-ATGCGATTTTTCGAGAACGAAATGC
* * * * * * ** * * * *
8924 TCGAAGGAATCGATCGTCTTGAA-TACTCTAAGCAAC-CGAA-GCTATAA-G-A--GAA-CT-T-
64 TC-AA--AA--AAT-TTCTCGAAGAAATCGAA-CGTCTTGAATACTTTAAGGAACCAAAGCTATA
* ** *
8979 ---G------AAAAAGTTTGACTAGTTCGGAAGTTTGGCCAAGAACCAAGAGAGAAAC-ATTCTC
122 AAAGAACTTCAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTC
** * * *
9034 CCATAAATAAATTTTTAATCCAAAGACCAA
187 AAATAAATAAATTATTAATCTAAAGATCAA
** * * * * * * * *
9064 AAGTTGTTTACAAAATAAC-AGATTTTTTGGAACTAATGATG-GATTTCTT-GAGTACGGAATGT
1 AAGTTGTTTACAAAAGCACTA-ACTATTTAGACCAAATGATGCGATTT-TTCGAGAACGAAATGC
* * * * * *
9126 TCGAAAAATTGT-TTGAAGAAATTGATCGTCTTGAATACTTTAAGGAACTAAAGTTATAAAAGAA
64 TCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
*** * * * **
9190 C-TCGAAAAAGTTTG-CAAAGCTT-GGCAGTTCAGCCTAGAACCAAGAGTGAAACAATTCTCACG
128 CTTC-AAAAAGTTTGAC-AAG-TTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAA
* * * *
9252 TAATTAAGTTTTTGAT-TCAAAGA-CTAA
190 TAAATAAATTATTAATCT-AAAGATC-AA
* * *** * * ** * * * * *
9279 AAGTTTTTTTACAAAAGGACTCGTTATTTGGAAC-AATGATGCGATTTCCCAATAATGGAATGTT
1 AAG-TTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * * * ** * * *
9343 CGAAAAATTGCAT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACTTAAGTTATAAACGTAC
65 CAAAAAATTTC-TCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
** *
9407 -TCGAAAAAGTTTGACAAGTTCTGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACATAA
129 TTC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAA
* * *
9469 ATAAATTTTTAATC-CAAGAACCAA
193 ATAAATTATTAATCTAAAG-ATCAA
* * * ** * * *
9493 AAGTTGTTTACAAAATG-A-GAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGT
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGC
* * * * * * *
9556 TCGACAAATTGT-TCGACGAAATGGATCGTCTTGAATACTTTAAGAAACCAAAGTTATAAAAGAA
64 TCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
*** * * * * *
9620 C-TCGAAAAAGTTTG-CAATGTTTGGAAGTTCGGCCTAGAACCAAGAGTGAAATAATTATCACAT
128 CTTC-AAAAAGTTTGACAA-GTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAAT
* * * * * *
9683 AACTAAGTTTTTAAT-TCAAATACCGA
191 AAATAAATTATTAATCT-AAAGATCAA
* * * * * * * * * *
9709 AAGTT-TTTACAAAATG-ACTAATTATTTGGACCGAATGATGAGATTTCTAGAAAATGGAATGTT
1 AAGTTGTTTACAAAA-GCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * * * * * * * *
9772 CGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAAGGAACCGACGTTATAAAAGTAC-
65 CAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACT
** * *
9836 TCAAAAAAGTTTGACAAGTTCGGAAGTTCGACCAAGAACC-A-AGAGAAACAATTCTCACATAAA
130 TC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAA
* * *
9899 TAAATTCTTAATCCAAAGACCAA
194 TAAATTATTAATCTAAAGATCAA
* * * * *
9922 AAGTTGTTTA-AAAATTG-AC-AGATTATTTAGACCAAATGCTGCAATTTCTCGAGAACGGAATG
1 AAGTTGTTTACAAAA--GCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATG
* * * * * * * *
9984 TTCGAAAAATTGT-TCGAAGAAATGGATCATCTTGAATACTTTAAGGAGCAAAAGTTATAAAAGA
63 CTCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGA
* * * * * * **
10048 AC-TCGAAAAAG-TTCACGAAG-T---AAGTTCGGCCTAGAACCACGAGTGAAATAATTCTTACG
127 ACTTC-AAAAAGTTTGAC-AAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAA
* * * *
10107 TAAATAAGTTTTTAAT-TCAAAGACCGA
190 TAAATAAATTATTAATCT-AAAGATCAA
* * * ** * * *
10134 AAGTT-TTCTACAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
1 AAGTTGTT-TACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * * * * * * *
10198 CAAAAAATTGCTCGAAGGAATCTATA-ATCTCG-ATACTTTAAGGAACCGAAGATATAAAAGTAC
65 CAAAAAATTTCTCGAAGAAATCGA-ACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
* * *
10261 -TCGAAAAAGTTTGACAAGTTCAGAAGTTCAGCCAAGAACCAAGAGAGAAACAATTCTCACATAA
129 TTC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAA
* *
10325 ATAAAATT-TTAATCCAAAGA-CTTA
193 AT-AAATTATTAATCTAAAGATC-AA
* *
10349 AAGTTGTTTACAAAATG-AC-AGATTATTT-GTACCAAATGATGCGA-TTTTCTGAGAACGAAAC
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAG-ACCAAATGATGCGATTTTTC-GAGAACGAAAT
* * * * * *
10410 GTTCGAAAAATTGT-TCGAAGAAATGGATCGTCTTGAATACGTTAAGGAACCAAAGTTATAAAAA
62 GCTCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTAT-AAAA
* ** * * * * *
10474 AAAC-TCAAAAAAGTTTGTA-AAGTTCGGATGTTTGGCCAAAAACAAAGAGAGAAATAATTCTCA
125 GAACTTC-AAAAAGTTTG-ACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * *
10537 CATAAATAAGTTTTTTA-CAAAAGGA-C-T
188 AATAAATAAATTATTAATCTAAA-GATCAA
* * * * * * * * ** **
10564 AACTAT-TTGA-ACCAAGTGA-T-GCGATTT--CCCGAGAATG--G-AATGCTT--AG-A-GAGT
1 AAGT-TGTTTACA-AAAG-CACTAACTATTTAGACC-A-AATGATGCGATTTTTCGAGAACGAAA
* * * * * * * * * *
10616 TGCTCAGAGGAATCAATCATCTTGAA-TAATCTAAGGAAC-CGAA-GCTATAA-G-A--GAA-CT
61 TGCTCA-A--AA--AAT-TTCTCGAAGAAATCGAACG-TCTTGAATACTTTAAGGAACCAAAGCT
* ** * * * **
10673 -T----G------AAAAAGTTTGACTAGTTCGGAAGTTCGGTCAAGATCCAAGACAGAAACGTTT
119 ATAAAAGAACTTCAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATT
* * * * *
10727 CTTACATAAATAAATTTTTAATCCAAAGACCAA
184 CTCAAATAAATAAATTATTAATCTAAAGATCAA
* * * * * * * * *
10760 AAGTTGTGTACAAAA-TAATAGATTATTTGGACCTAATAATGCGATTTCTT-GAGAACGGAATGT
1 AAGTTGTTTACAAAAGCACTA-ACTATTTAGACCAAATGATGCGATTT-TTCGAGAACGAAATGC
* * ** * *
10823 TCGAAAAATTGT-TCGAAGAAATTGATGGTCTTGAATACTTTAACGAACCAAAGTTATAAAAGAA
64 TCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
**** * * * * * * **
10887 C-TCAAAAAAGTTTG-CAAAGTTTGGTAGTTCAGCCTAGAGCCAAGGGTGAAATAATTCTCATGT
128 CTTC-AAAAAGTTTGAC-AAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAAT
* * *
10950 AAATAAGTTTTTAAT-TCAAAGA-CTTA
191 AAATAAATTATTAATCT-AAAGATC-AA
* *** * * * * * * *
10976 AAGTT-TTTAACAAAAGGACTTGTTATTTGGACC-AATGATACGATTTTCCAAGAATGGAATGTT
1 AAGTTGTTT-ACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * * * * * * * * *
11039 CGAAAAATTGCGCGAAGGAATCGATCGTCTTGAATACTTTAAGAAACCGAAGTTATAAACGTACT
65 CAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACT
** * * ** **
11104 AGAGAAAGTTTAACAAGTTCTGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCGCATAAAT
130 TCAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAAT
* *
11167 AATATT-TTAATC-CAAGAACCAA
195 AA-ATTATTAATCTAAAG-ATCAA
* * * ** * * *
11189 AAGTTGTTTACAAAATG-A-GAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGT
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGC
* * * *
11252 TCAAAAAATTGT-TCGACGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
64 TCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
*** * * * **
11316 C-TCGAAAAAGTTTG-CAAAGTTTGGAAGTTCGGCCTAGAACCAAGAGTG--A-AA-TGTCACGT
128 CTTC-AAAAAGTTTGAC-AAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAAT
* * * *
11375 AAATAAGTTTTTAAT-TCAAAGACCGA
191 AAATAAATTATTAATCT-AAAGATCAA
* * * * * * * * * * *
11401 AAGTTTTTTACAAAAGGACTAATTATTTGGACCAAATGATG-AAATTTCCAGAAAATGGAATGTT
1 AAGTTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTC-GAGAACGAAATGCT
* * * * * * * * *
11465 CGAAAAATTGCTCGAATAAATTGATCGTCATGAATACTTTAAGGAACCAAAGTTAAAAAAGTAC-
65 CAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACT
** *
11529 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACATAAA
130 TC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAA
* *
11592 TAAAATT-TTAATCCAAAGACCAA
194 T-AAATTATTAATCTAAAGATCAA
* * * * * *
11615 AATTTGTTTACAAAATG-AC-AGATTATTTGGACCAAATGATG-AAATTTCCTGAGAACGAAATG
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAGACCAAATGATGCGATTTTTC-GAGAACGAAATG
* * ** * * * * *
11677 TTCGAAAAATTGT-TCGAAGAAAAGGATCATCTTGAATACTTTAAGGAGCAAAAGTTATAAAAGA
63 CTCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGA
* * * * * **
11741 AC-TCGAAAAAGTTT-ACAAAG-T---AAGTTCGGCCTAGAACCACGAGTGAAATAATTCTTACG
127 ACTTC-AAAAAGTTTGAC-AAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAA
* * *
11800 TAAATAAGTTTTTAAT-TCAAAGACCGAA
190 TAAATAAATTATTAATCT-AAAGATC-AA
* * * ** * *
11828 AA-TT-TTATACAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGAAATGTT
1 AAGTTGTT-TACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
** * * * * * * *
11891 CAAAAAATTGATCGAAGGAATCGATCGTCTTCAATACTTTAAGGAATCGAAGATATAAAAGTAC-
65 CAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACT
* * * *
11955 TCAACAAAGTTTGAAAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACAGAAA
130 TCAA-AAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAA
* *
12020 TAAAATT-TTAATCCAAAGACCAA
194 T-AAATTATTAATCTAAAGATCAA
* * ** * *
12043 AAGTTGTTTACAAAATG-A-TAGATTATTTTGACCAAATGATGCGATTTCCCGAGAATGGAATGC
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGC
* * * * * ** * * * * *
12106 TTAGAAAATTGCTTGAAGGAATCGATTGTCTTCAATACTCTATGAAACCGAAGCTATAAAAGAAC
64 TCAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
* * * * *
12171 TTGAAAAAGTTTGACTAGTTCGAAAGTTAGGCCAAGAACCAAGAGAGAAAC-ATTACTCACATAA
129 TTCAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATT-CTCAAATAA
* *
12235 ATAAATTTTTAATCCT-AAGACCAA
193 ATAAATTATTAAT-CTAAAGATCAA
* * * ** * *
12259 AAGTTGTTTACAAAATG-AC-AGATTATTTGGACCTAATGATGCGATTTCCCGAGAACGGAATGT
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGC
* * * * * * *
12322 TCGAAAAATTGT-TCGAAAAAATAGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAG
64 TCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
*** * * * * * **
12386 C-TCGAAAAAGTTTG-CAAAGTTTGGAAGTTTGGCCTAGAACCAAGCGAGAAATAATTCTTACGT
128 CTTC-AAAAAGTTTGAC-AAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAAT
* * * *
12449 AAATAAGTTTTTAAT-TCAAAGACCGA
191 AAATAAATTATTAATCT-AAAGATCAA
* * * * * * * * *
12475 ACGTTTTTTACAAAAGGACTAACTATTTGGACCAAATGATGCAATTTCTCGAGAATGTAATGTTC
1 AAGTTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCTC
* * * * *
12540 AAAAAATTGCTTGAACG-AATCGGTA-GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAAAAC
66 AAAAAATTTCTCGAA-GAAATC-GAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
* * * * ** *
12603 -TCAAAAATGCTTGGCAAGTTTAGAAGTTCAACCAAGAA--ATA-AGAGAAACAATTCTCACATA
129 TTCAAAAA-GTTTGACAAGTTCAAAAGTTCGGCCAAGAACCA-AGAGAGAAACAATTCTCAAATA
* * *
12664 AATAAATTTTTAATCCAAAGACCAA
192 AATAAATTATTAATCTAAAGATCAA
* * * ** ** * * * *
12689 AAGTTGTTTACAAAATG-AC-AGATTATTTGGACCAAATGTTAAGATTTCCCGAGCATGGAATGT
1 AAGTTGTTTACAAAA-GCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGC
*** * * * *** * * * * *
12752 TTTGAAAATTGCTCGAAGGAATGGATTATCTTGTATACTTTAAGGATCCGAAGTTATAAAATAAC
64 TCAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
* * * * * * ***
12817 -TCATAAAAGTTTGACAAGTTCGAAAGTTCAG-TAAAAACCAAGGGAGAAACCATTCTCTCGTAA
129 TTCA-AAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAA
* *
12880 ATAAGTTTTTAATTCT-AAGA-CAGA
193 ATAAATTATTAA-TCTAAAGATCA-A
* * * * * * * **
12904 ATGTTGTTTACAAAATG-ACAAACTATTTTGACCAAATGATGCTATTTCTCGAGCATGAAATATT
1 AAGTTGTTTACAAAA-GCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
** * * * **
12968 CAAAAAATTGGTCGAAGGAAT-GAATCGTCTTGAATACTGTAAGGAATCAAAGCTATAATTGAAC
65 CAAAAAATTTCTCGAAGAAATCGAA-CGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
*** ** * * *
13032 -TCAAAAAAGTTTGA-AATGTTTGGAAGTTCAACCAAGAACCAAGAGAGAAAGAATACT-AATGT
129 TTC-AAAAAGTTTGACAA-GTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAA-AT
* * *
13094 TAATAAGTTTTTAAT-TCAAAGAGT-AA
191 AAATAAATTATTAATCT-AAAGA-TCAA
* * * *** * ** ** * * *
13120 AAGTTGTTTA-AAATA--ACAAACTACTTGGTTGAAATGACGTAATTTTTTTAGCATGAAATGGT
1 AAGTTGTTTACAAA-AGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * * * * * * * * *
13182 CAGAAAATTTTTCGATGGAATGGATCGTCTTGAATACTTTAAAGAACCAAAGTTACAAAAAAACT
65 CAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACT
** * * * * * * * **
13247 TGTAAAAGTTTGACATGTTTAGATGTTCAGCCAAGAGCCAAGAGAGAAACAGTTCTCACGTAAAT
130 TCAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAAT
*
13312 AAATCT-TTAAT-TCAAAGACCAA
195 AAAT-TATTAATCT-AAAGATCAA
** * * * * * *
13334 AAGTTGTTTACGAACTG-ACTAACTATTTAGACCAAATCATGCGACTTCTT-GAGCATGGAATGT
1 AAGTTGTTTAC-AAAAGCACTAACTATTTAGACCAAATGATGCGA-TTTTTCGAGAACGAAATGC
* * * * * * * * * * * *
13397 TC-AAAATTTTGTTAGAAGGAATGGATCATATTGTATACTTTTAAGGGACCGAAGTTA-AAAAGA
64 TCAAAAAATTT-CTCGAAGAAATCGAACGTCTTGAATAC-TTTAAGGAACCAAAGCTATAAAAGA
* ** *** * * **
13460 AC-TCGTAAAAGTTTGACAAGTTCGGAAGTTTAACTAAGAACCAAGAGAGAAATAATTCTCATGT
127 ACTTC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAAT
* * * *
13524 AAATAAGTTTTTAATCCAAAGACCAA
191 AAATAAATTATTAATCTAAAGATCAA
** * * * ** * *
13550 AAGTT-TTTACAAAATAAC-AGATTATTTGGACCAAATGATGCAATTTCCCGAGAATCG-ATTGT
1 AAGTTGTTTACAAAAGCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAA-CGAAATGC
* * * * * * * * *
13612 TCGAAAAATTGCTCGAAGGACTGGATCGTCTTGAATACTTTAAGAAACTAAAGTTATAAAAGAAC
64 TCAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
* * ** ** * *
13677 TTGAAAAAGTTTGAAAAGTTCGGAAGTTAAGCCAAGAACCAAGAGAGAAACAATTCTTACATAAA
129 TTCAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAA
* * *
13742 TAAGTTTTTAAT-TCAAAGA-CTGA
194 TAAATTATTAATCT-AAAGATC-AA
* * * * * ** * * *
13765 AAGTTTTTTACAAAAGGACAAACTATTTGGACCAAATGGTATGATTTCTCGA-AGCTAAAATG-T
1 AAGTTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAAC-GAAATGCT
* * * * * * * * *
13828 TAGGAAAATTGCTCGAA-AGAATCTATCATCTTGAATAATTTAAGGAACCGAAGTTATAAAAGAA
65 CA-AAAAATTTCTCGAAGA-AATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
** * * * * * *
13892 C-TCAAAAAAGTTTGACAAGTTCGGAACTTCGGCGAAGAACGAAGAAAGAAAAAATTCTCACATA
128 CTTC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATA
* * * * *
13956 AATAAGTTTTTTAT-TCAAAGACCGA
192 AATAAATTATTAATCT-AAAGATCAA
* * * * * * * * *
13981 AAGTTGGTTACAAAAGGA-TAAAATATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
1 AAGTTGTTTACAAAAGCACT-AACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
*** * * * ** * * * *
14045 TGGAAAATTGCTCGAAGGAATGGATTGTCTTGAATACTTTAGGGAACTGAAA-TTATAAAATAAC
65 CAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAAC-CAAAGCTATAAAAGAAC
** * * * * * **
14109 TTGTAAAAGTTTGACAATTTCGAAAGCTT-AGTCAAGAACCAATG-GAGAAACCATTCTCACGTA
129 TTCAAAAAGTTTGACAAGTTCAAAAG-TTCGGCCAAGAACCAA-GAGAGAAACAATTCTCAAATA
* *
14172 AATAAGTTTTTAATTCT-AAGA-CGAA
192 AATAAATTATTAA-TCTAAAGATC-AA
* * ** * * * *
14197 AAGTTGTTTACAAAATG-ACAAACTATTTGGACCAAATGATGCGATTTACCGAGCATGGAATGTT
1 AAGTTGTTTACAAAA-GCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * * * * * *
14261 CAGATACTTGT-TCGAAGGAATCGATA-GTCATGAATACTTTAAGGAACCGAAGTTATAAAAGAA
65 CAAAAAATT-TCTCGAAGAAATCGA-ACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
* ** * *
14324 C-TCGAAAAATTTTGACAAGTTCGGAAGTTCGGTCAAGAAACAAGAGAGAAACAATTCTCACAA-
128 CTTC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCA-AAT
* * *
14387 AAAAAAATTTTTAATCCAAAGA-CAAA
191 AAATAAATTATTAATCTAAAGATC-AA
* * * * * ** * *
14413 AAGTTG--T--GATAG-A-T---TATTTGGACCAAATGACGGGATTTCCCGATG-ACGGAATGTT
1 AAGTTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGA-GAACGAAATGCT
* * * * * *
14468 C-GAAAATTTGTTCAAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
65 CAAAAAATTT-CTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAAC
** ** * * **
14532 -TCGAAAAAGTTTGACAAGTTCGGAAGTTCAACCTAGAACCAAGAGAGAAATAATTCTCACGTAA
129 TTC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAA
** * *
14596 ATAGGTTTTTAAT-TCAAAGACCAA
193 ATAAATTATTAATCT-AAAGATCAA
* ** * * *
14620 AAG-TGTTTTACAAAATG-ACTAACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGT
1 AAGTTG-TTTACAAAA-GCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGC
*** * * * * * *
14683 TTGGAAAATTTCAT-GAAGGAATCGATCGTTTTCAATACTTTAAGGAACCGAAGTTATAAAAGAA
64 TCAAAAAATTTC-TCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
*** * * *
14747 C-TCGAAAAAGTTTGACAAGTTTGGAAGTTCGGCCAAGAACCAATAGAGAAATAATTCTCATATA
128 CTTC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATA
* *
14811 AATAAATTTTTAAT-TCAAAGACCAA
192 AATAAATTATTAATCT-AAAGATCAA
** * * * * * *
14836 AAGTTGTTTACAAAATG-ACTGGCTATTTGGACCAAATTATGCAATTTCTCGAGAACAAAATGTT
1 AAGTTGTTTACAAAA-GCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * * *
14900 CAAAAAATTGT-TTGAAGAAAT-GTATCGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAA
65 CAAAAAATT-TCTCGAAGAAATCG-AACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
* ** * * * * **
14963 CTTGAAAAAGTTTGTA-AAGTTCGGAAGTTTGGCCTAGAACCAAGAGAGAAATAATTCCCACGTA
128 CTTCAAAAAGTTTG-ACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATA
* * * *
15027 AATATATTTTTTA-CGAAAGGA-CTAA
192 AATAAATTATTAATCTAAA-GATC-AA
* ** * * * ** * ** *
15052 CTA-TT-TGGACCAAATG-A-TGA-GATTT---CCCGA-GAATG-GAATGCTCG-GAA--AATTG
1 -AAGTTGTTTA-CAAAAGCACTAACTATTTAGACCAAATG-ATGCGATTTTTCGAGAACGAAATG
*
15104 CTCAAAAGAA---CT----G--ATC--A--TCTTGAATACTTTAAGGAACCGAAG-TAATAAAAG
63 CTCAAAA-AATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCT-ATAAAAG
* * * * * ** *
15155 AACTTGAAAAAGTTTGATAGGTTCAAAAGTTAGACCAAGAACCAAGAGAGAAACGTTTCTCACAT
126 AACTTCAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAAT
* * *
15220 AAATAAATTTTTAATCCAAAGACCAA
191 AAATAAATTATTAATCTAAAGATCAA
* * * * ** * *
15246 AAGTTGTTTACAAACTG-AC-AGATTATTTGGAACAAATGATGCGATTTCCCGAGAACGGAATGT
1 AAGTTGTTTACAAA-AGCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGC
** * * * *
15309 TTGAAAAATTGT-TCGAAGAAATGGATCGTCTTGAACACTTTAAGGAACCAAAGTTATAAAAGAA
64 TCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAA
*** * * * * * **
15373 C-TCAAAAAAGTTTG-CAAAGTTTGGCAA-TTCAGCCTAGAACCAAGAGTGAAATAATTATCACG
128 CTTC-AAAAAGTTTGAC-AAG-TTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAA
* * *
15435 TAAATAAGTTTTTAAT-TCAAAGATCGA
190 TAAATAAATTATTAATCT-AAAGATCAA
* * * * * ** * * * *
15462 AAGTTTTTTTACAAAAGGAATAATTATTTGGACCAAATGATGCGATTTCCCAAGAATGGAATGTT
1 AAG-TTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCT
* * * * * * * * * *
15527 CGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAGGTAC-
65 CAAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACT
* ** *
15591 TCGAAAAGGTTTGACAAGTTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCATATAAA
130 TC-AAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAA
* * *
15654 TAAATTCTTAATCCAAAGACCAA
194 TAAATTATTAATCTAAAGATCAA
* * * ** *
15677 AAGTTGTTTA-AAAATTG-AC-AGATTATTTAGACCAAATGCTGCAATTTCCCGAGAACGGAATG
1 AAGTTGTTTACAAAA--GCACTA-ACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATG
* * * * * * * * *
15739 TTCGAAAAATTGT-TCGAAGAAATGGATCATCTTGAATACTTTAAGGAGCAAAAGTTAGAAAAGA
63 CTCAAAAAATT-TCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGA
15803 ACT
127 ACT
15806 CGAGAATAAG
Statistics
Matches: 8085, Mismatches: 1590, Indels: 1299
0.74 0.14 0.12
Matches are distributed among these distances:
177 4 0.00
178 2 0.00
179 8 0.00
180 3 0.00
181 1 0.00
182 3 0.00
184 6 0.00
185 4 0.00
186 4 0.00
187 6 0.00
188 6 0.00
189 3 0.00
190 1 0.00
192 7 0.00
193 39 0.00
194 345 0.04
195 40 0.00
196 20 0.00
197 31 0.00
198 16 0.00
199 29 0.00
200 25 0.00
201 21 0.00
202 17 0.00
203 11 0.00
204 61 0.01
205 50 0.01
206 28 0.00
207 177 0.02
208 14 0.00
209 23 0.00
210 80 0.01
211 152 0.02
212 539 0.07
213 265 0.03
214 1439 0.18
215 1310 0.16
216 2797 0.35
217 453 0.06
218 9 0.00
219 4 0.00
220 10 0.00
221 6 0.00
222 2 0.00
223 8 0.00
224 4 0.00
225 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
AAGTTGTTTACAAAAGCACTAACTATTTAGACCAAATGATGCGATTTTTCGAGAACGAAATGCTC
AAAAAATTTCTCGAAGAAATCGAACGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACTT
CAAAAAGTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAAATAAATA
AATTATTAATCTAAAGATCAA
Found at i:7749 original size:194 final size:194
Alignment explanation
Indices: 7393--7782 Score: 464
Period size: 194 Copynumber: 2.0 Consensus size: 194
7383 CAAAAAGTTG
* * *
7393 TTTACAAAATGACAAATTATTCAGACCAAATGATGCGATTTCCCGAGAACGAAATGTTCGAAAAA
1 TTTACAAAAGGACAAACTATTCAGACCAAATGATGCGATTTCCCGAGAACGAAATGCTCGAAAAA
* *
7458 TTGTTCGAAGAAATTAATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGAAAAA
66 TTGCTCGAAGAAACTAATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGAAAAA
* * * * * * * *
7523 GTTTATAAAGTTCGGAAGTTTGGCCTAGAACCAAGAGAGAAATAATTCTCACGTAAATATATTT
131 GTTTATAAAGCTCGAAAGTTTAGACTAGAACCAAGAGAAAAACAATTCTCACATAAATAAATTT
* ** * * * *
7587 TTTACAAAAGGACTAACTATTTGGACCAAATGATGTGATTTCCCGAGAATGGAATGCTCGGAAAA
1 TTTACAAAAGGACAAACTATTCAGACCAAATGATGCGATTTCCCGAGAACGAAATGCTCGAAAAA
* * * *
7652 TTGCTCGAA-AGAACTGATTGTCTTGAATACTTTAAGGAACCGAAG-TAGTAAAAGAACTTGAAA
66 TTGCTCGAAGA-AACTAATCGTCTTGAATACTTTAAGGAACCAAAGTTA-TAAAAGAACTAGAAA
* * **
7715 AAGTTTGA-CAGGCTCGAAAG-TTAGACTAAGAACCAAGAGAAAAACGTTTCTCACATAAATAAA
129 AAGTTT-ATAAAGCTCGAAAGTTTAGACT-AGAACCAAGAGAAAAACAATTCTCACATAAATAAA
7778 TTT
192 TTT
7781 TT
1 TT
7783 AATCCAAAGA
Statistics
Matches: 164, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
193 8 0.05
194 155 0.95
195 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (194 bp):
TTTACAAAAGGACAAACTATTCAGACCAAATGATGCGATTTCCCGAGAACGAAATGCTCGAAAAA
TTGCTCGAAGAAACTAATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGAAAAA
GTTTATAAAGCTCGAAAGTTTAGACTAGAACCAAGAGAAAAACAATTCTCACATAAATAAATTT
Found at i:8652 original size:215 final size:215
Alignment explanation
Indices: 7584--10551 Score: 2457
Period size: 215 Copynumber: 13.9 Consensus size: 215
7574 CGTAAATATA
* * * * **
7584 TTTTTTACAAAAGGACTAACTATTTGGACCAAATGATGTGATTTCCCGAGAATGGAATGCTCGGA
1 TTTTTTACAAAATGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTAA
* * *
7649 AAATTGCTCGAAAGAA-CTGATTGTCTTGAATACTTTAAGGAACCGAAG-TAGTAAAAGAACTTG
66 AAATTGCTCGAAGGAATC-GATCGTCTTGAATACTTTAAGGAACCGAAGTTA-TAAAAGAACTCG
* * * * * * **
7712 AAAAAGTTTGACAGGCTCGAAAGTTAGACTAAGAACCAAGAGAAAAACGTTTCTCACATAAATAA
129 AAAAAGTTTGACAAGTTCGGAAGTTCGGC-AAGAACCAAGAGAGAAACAATTCTCACATAAATAA
7777 ATTTTTAATCCAAAGACCAAAAG
193 ATTTTTAATCCAAAGACCAAAAG
* *
7800 TTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAACGGAATGTT-TG
1 TTTTTTACAAAATGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCT-
** * * * * *
7863 AAAAATTATTCGAAGAAATTGATCGTCTTGAACACTTTAAGGAACCAAAGTTATAAAAGAACTCA
64 AAAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * * * * *
7928 AAAAAGTTTG-CAAAGTTTGGCAGTTCAGCCTAGAACCAAGAGTGAAATAATTCTCACGTAAATA
129 AAAAAGTTTGAC-AAGTTCGGAAGTTC-GGCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* * ** * *
7992 AGTTTTAAATTGAAAGATCGAAAG
192 AATTTTTAATCCAAAGACCAAAAG
* * * *
8016 TTTTTTTACAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCAAGAACGGAATGTTCAA
1 -TTTTTTACAAAATGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTA
* * * * * *
8081 AAAATTGCTCGAAAGAATCGATCGTCTTTAATACTTTAAGGAACTGAAGTTATAAATGTACTTGA
65 AAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGA
*
8146 AAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAAA
130 AAAAGTTTGACAAGTTCGGAAGTTCGG-CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAA
8209 TTTTTAATCCAAAGACCAAAAG
194 TTTTTAATCCAAAGACCAAAAG
* * * *
8231 TTGTTTACAAAATGAC-AGATTATTTGGACAAAATGATGCAATTTCCCGAGAACGGAATGTTCTA
1 TTTTTTACAAAATGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTA
* * * * * *
8295 AAAATTGTTCGAAGAAATGGATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGA
65 AAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGA
** * * * *
8360 AACTGTTTG-CAAAG-T---AAGTTCGGCCTAGAACCATGAGTGAAATAATTCTCACATAAATAA
130 AAAAGTTTGAC-AAGTTCGGAAGTTCGG-CAAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* ** *
8420 GTTTTTAATTTAAAGACCGAAAG
193 ATTTTTAATCCAAAGACCAAAAG
* * * * * *
8443 TTTTTTACAAAAGGACTAATTATTTGGGCCAAATGATGCGATATCCC-AGGAATGAAATG-CCTT
1 TTTTTTACAAAATGACTAATTATTTGGACCAAATGATGCGATTTCCCGA-GAATGGAATGTTCTA
* * *
8506 AAAATTGCTCGAAGGAATCGATCGTCTTGAATTCTTTAAGGAACCGAAGATATAAAAGTACTCGA
65 AAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGA
* *
8571 CAAAGTTTGACAAGTTCGGAAGTTCAGGCAAGAACCAAGAGAGAAACAGTTCTCACATAAATAAA
130 AAAAGTTTGACAAGTTCGGAAGTTC-GGCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAA
*
8636 ATTTTAATCCAAAGACCAAAAG
194 TTTTTAATCCAAAGACCAAAAG
* * * * * *
8658 TTGTTTATAAAATGAC-AGAATATTTGTACCAAATGATGCGATTTCCC-AGAACGGAATGTTCGA
1 TTTTTTACAAAATGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTA
* * * * * *
8721 AAAATTGTTCGAAGAAAT-GAATCATCTTGAATACTTTAAGGAACCAAAGTTTTAAAAAAAACTC
65 AAAATTGCTCGAAGGAATCG-ATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAGAACTC
* * * * *
8785 GAAGAAGTTTGTA-AAGTTCGGAAG-TCTGGCCTAGAACGAATAGAGAAATAATTCTCACATAAA
128 GAAAAAGTTTG-ACAAGTTCGGAAGTTC-GG-CAAGAACCAAGAGAGAAACAATTCTCACATAAA
* * * *
8848 TAAGATATTT-A-CAAAAGGA-C-TAAC
190 TAA-ATTTTTAATCCAAA-GACCAAAAG
** * *** ** * * * *
8872 TATTTGGATC-AAGTGA-T-GCGATTT---CCCGA-GAATG-GAATGCTC-AG-A--GAATTGCT
1 T-TTTTTA-CAAAATGACTAATTATTTGGACCAAATG-ATGCGATTTCCCGAGAATGGAA-TGTT
* * * * *** * * * *
8925 CGAAGGAATCGATCGTCTTGAAT--A-C-TCTAAGCAACCGAAGCTATAA-G-A--GAACTTGA-
62 CTAA-AAATTGCTCG-AAGGAATCGATCGTCT-TG-AA---TA-CTTTAAGGAACCGAAGTT-AT
* * ** * * * *
8981 AAAAG--TTTG-ACTAGTTCG-GAAGTTTGGCCAAG---A------ACCAAGAGAGAAAC-ATTC
118 AAAAGAACTCGAAAAAGTTTGACAAGTTCGG--AAGTTCGGCAAGAACCAAGAGAGAAACAATTC
*
9032 TCCCATAAATAAATTTTTAATCCAAAGACCAAAAG
181 TCACATAAATAAATTTTTAATCCAAAGACCAAAAG
* * * * * ** * * *
9067 TTGTTTACAAAATAAC-AGATTTTTTGGAACTAATGATG-GATTTCTTGAGTACGGAATGTTCGA
1 TTTTTTACAAAATGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTA
* * * * **
9130 AAAATTGTTTGAAGAAATTGATCGTCTTGAATACTTTAAGGAACTAAAGTTATAAAAGAACTCGA
65 AAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGA
* * * * * *
9195 AAAAGTTTG-CAAAGCTT-GGCAGTTCAGCCTAGAACCAAGAGTGAAACAATTCTCACGTAATTA
130 AAAAGTTTGAC-AAG-TTCGGAAGTTC-GGCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* * * *
9258 AGTTTTTGATTCAAAGACTAAAAG
192 AATTTTTAATCCAAAGACCAAAAG
* ** * * * *
9282 TTTTTTTACAAAAGGACTCGTTATTTGGAAC-AATGATGCGATTTCCCAATAATGGAATGTTCGA
1 -TTTTTTACAAAATGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTA
** * *
9346 AAAATTGCAT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACTTAAGTTATAAACGTACTCG
65 AAAATTGC-TCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
*
9410 AAAAAGTTTGACAAGTTCTGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAA
129 AAAAAGTTTGACAAGTTCGGAAGTTCGG-CAAGAACCAAGAGAGAAACAATTCTCACATAAATAA
9473 ATTTTTAATCC-AAGAACCAAAAG
193 ATTTTTAATCCAAAG-ACCAAAAG
* * *
9496 TTGTTTACAAAATGA-GAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGA
1 TTTTTTACAAAATGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTA
* * * * * * *
9560 CAAATTGTTCGACGAAATGGATCGTCTTGAATACTTTAAGAAACCAAAGTTATAAAAGAACTCGA
65 AAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGA
* * * * * *
9625 AAAAGTTTG-CAATGTTTGGAAGTTCGGCCTAGAACCAAGAGTGAAATAATTATCACATAACTAA
130 AAAAGTTTGACAA-GTTCGGAAGTTCGG-CAAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* * * *
9689 GTTTTTAATTCAAATACCGAAAG
193 ATTTTTAATCCAAAGACCAAAAG
* * ** * *
9712 -TTTTTACAAAATGACTAATTATTTGGACCGAATGATGAGATTTCTAGAAAATGGAATGTTCGAA
1 TTTTTTACAAAATGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTAA
* * * *
9776 AAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAAGGAACCGACGTTATAAAAGTACTCAAA
66 AAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAA
*
9841 AAAGTTTGACAAGTTCGGAAGTTCGACCAAGAACC-A-AGAGAAACAATTCTCACATAAATAAAT
131 AAAGTTTGACAAGTTCGGAAGTTCG-GCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAAT
*
9904 TCTTAATCCAAAGACCAAAAG
195 TTTTAATCCAAAGACCAAAAG
* * * * * * *
9925 TTGTTTA-AAAATTGAC-AGATTATTTAGACCAAATGCTGCAATTTCTCGAGAACGGAATGTTCG
1 TTTTTTACAAAA-TGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCT
* * * * * **
9988 AAAAATTGTTCGAAGAAATGGATCATCTTGAATACTTTAAGGAGCAAAAGTTATAAAAGAACTCG
64 AAAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * * * * *
10053 AAAAAG-TTCACGAAG-T---AAGTTCGGCCTAGAACCACGAGTGAAATAATTCTTACGTAAATA
129 AAAAAGTTTGAC-AAGTTCGGAAGTTCGG-CAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* * *
10113 AGTTTTTAATTCAAAGACCGAAAG
192 AATTTTTAATCCAAAGACCAAAAG
* * *
10137 TTTTCTACAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAA
1 TTTTTTACAAAATGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTAA
* ** * * *
10202 AAATTGCTCGAAGGAATCTATAATCTCG-ATACTTTAAGGAACCGAAGATATAAAAGTACTCGAA
66 AAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAA
* * *
10266 AAAGTTTGACAAGTTCAGAAGTTCAGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAAA
131 AAAGTTTGACAAGTTCGGAAGTTC-GGCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAAT
**
10331 TTTTAATCCAAAGACTTAAAG
195 TTTTAATCCAAAGACCAAAAG
* * * * * * * *
10352 TTGTTTACAAAATGAC-AGATTATTTGTACCAAATGATGCGATTTTCTGAGAACGAAACGTTCGA
1 TTTTTTACAAAATGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTA
* * * * * * *
10416 AAAATTGTTCGAAGAAATGGATCGTCTTGAATACGTTAAGGAACCAAAGTTATAAAAAAAACTCA
65 AAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCG
* * * * *
10481 AAAAAGTTTGTA-AAGTTCGGATGTTTGGCCAAAAACAAAGAGAGAAATAATTCTCACATAAATA
129 AAAAAGTTTG-ACAAGTTCGGAAGTTCGG-CAAGAACCAAGAGAGAAACAATTCTCACATAAATA
*
10545 AGTTTTT
192 AATTTTT
10552 TACAAAAGGA
Statistics
Matches: 2192, Mismatches: 433, Indels: 253
0.76 0.15 0.09
Matches are distributed among these distances:
192 5 0.00
193 19 0.01
194 23 0.01
195 3 0.00
196 3 0.00
198 5 0.00
199 12 0.01
200 7 0.00
201 8 0.00
202 26 0.01
203 11 0.01
204 12 0.01
205 9 0.00
206 14 0.01
207 16 0.01
208 8 0.00
209 12 0.01
210 38 0.02
211 111 0.05
212 207 0.09
213 92 0.04
214 408 0.19
215 506 0.23
216 419 0.19
217 215 0.10
218 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (215 bp):
TTTTTTACAAAATGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCTAA
AAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAA
AAAGTTTGACAAGTTCGGAAGTTCGGCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATT
TTTAATCCAAAGACCAAAAG
Found at i:9612 original size:214 final size:214
Alignment explanation
Indices: 8855--10551 Score: 1829
Period size: 214 Copynumber: 7.9 Consensus size: 214
8845 AAATAAGATA
* * * * * *
8855 TTTACAAAAGGACTA-ACTATTTGGATCAAGTGATGCGATTTCCCGAGAATGGAATGCTC-AGAG
1 TTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGA-AA
* * * * * * * *
8918 AATTGCTCGAAGGAATCGATCGTCTTGAATACTCTAAGCAACCGAAGCTATAAGAGAACTTGAAA
64 AATTGTTCGAAGAAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAA
* * *
8983 AAGTTTGACTAGTTCGGAAGTTTGGCCAAGAACCAAGAGAGAA-ACATTCTCCCATAAATAAATT
129 AAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGA-AACA-ATTCTCACATAAATAAATT
9047 TTTAATCCAAAGACCAAAAGTTG
192 TTTAATCCAAAGACCAAAAGTTG
* * * * ** * *
9070 TTTACAAAATAACAGATTTTTTGGAACTAATGATG-GATTTCTTGAGTACGGAATGTTCGAAAAA
1 TTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAA
* * *
9134 TTGTTTGAAGAAATTGATCGTCTTGAATACTTTAAGGAACTAAAGTTATAAAAGAACTCGAAAAA
66 TTGTTCGAAGAAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAA
* * * * * *
9199 GTTTG-CAAAGCTT-GGCAGTTCAGCCTAGAACCAAGAGTGAAACAATTCTCACGTAATTAAGTT
131 GTTTGAC-AAG-TTCGGAAGTTCGGCCAAGAACCAAGA--GAAACAATTCTCACATAAATAAATT
* * * *
9262 TTTGATTCAAAGACTAAAAGTTTT
192 TTTAATCCAAAGACCAAAAG-TTG
* * * * *
9286 TTTACAAAAGGACTCG-TTATTTGGAAC-AATGATGCGATTTCCCAATAATGGAATGTTCGAAAA
1 TTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAA
* * ** * *
9349 ATTGCAT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACTTAAGTTATAAACGTACTCGAAA
65 ATTG-TTCGAAGAAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAA
*
9413 AAGTTTGACAAGTTCTGAAGTTCGGCCAAGAACCAAGAGAAACAATTCTCACATAAATAAATTTT
129 AAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAAACAATTCTCACATAAATAAATTTT
9478 TAATCC-AAGAACCAAAAGTTG
194 TAATCCAAAG-ACCAAAAGTTG
* *
9499 TTTACAAAATGAGAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGACAAA
1 TTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAA
* * *
9564 TTGTTCGACGAAATGGATCGTCTTGAATACTTTAAGAAACCAAAGTTATAAAAGAACTCGAAAAA
66 TTGTTCGAAGAAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAA
* * * * * *
9629 GTTTG-CAATGTTTGGAAGTTCGGCCTAGAACCAAGAGTGAAATAATTATCACATAACTAAGTTT
131 GTTTGACAA-GTTCGGAAGTTCGGCCAAGAACCAAGA--GAAACAATTCTCACATAAATAAATTT
* * *
9693 TTAATTCAAATACCGAAAGTT-
193 TTAATCCAAAGACCAAAAGTTG
* * ** *
9714 TTTACAAAATGACTA-ATTATTTGGACCGAATGATGAGATTTCTAGAAAATGGAATGTTCGAAAA
1 TTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAA
* * * * * * *
9778 ATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAAGGAACCGACGTTATAAAAGTACTCAAAAA
65 ATTGTTCGAAGAAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAA
* *
9843 AGTTTGACAAGTTCGGAAGTTCGACCAAGAACCAAGAGAAACAATTCTCACATAAATAAATTCTT
130 AGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAAACAATTCTCACATAAATAAATTTTT
9908 AATCCAAAGACCAAAAGTTG
195 AATCCAAAGACCAAAAGTTG
* * * * *
9928 TTTA-AAAATTGACAGATTATTTAGACCAAATGCTGCAATTTCTCGAGAACGGAATGTTCGAAAA
1 TTTACAAAA-TGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAA
* * * *
9992 ATTGTTCGAAGAAATGGATCATCTTGAATACTTTAAGGAGCAAAAGTTATAAAAGAACTCGAAAA
65 ATTGTTCGAAGAAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAA
* * * * * * *
10057 AG-TTCACGAAG-T---AAGTTCGGCCTAGAACCACGAGTGAAATAATTCTTACGTAAATAAGTT
130 AGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCA--AGAGAAACAATTCTCACATAAATAAATT
* *
10117 TTTAATTCAAAGACCGAAAGTT-
192 TTTAATCCAAAGACCAAAAGTTG
* *
10139 TTCTACAAAAGGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAA
1 TT-TACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAA
* * * ** * * * *
10203 AATTGCTCGAAGGAATCTATAATCTCG-ATACTTTAAGGAACCGAAGATATAAAAGTACTCGAAA
64 AATTGTTCGAAGAAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAA
* * *
10267 AAGTTTGACAAGTTCAGAAGTTCAGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAAAT
129 AAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAAATT
**
10332 TTTAATCCAAAGACTTAAAGTTG
192 TTTAATCCAAAGACCAAAAGTTG
* * * * * *
10355 TTTACAAAATGACAGATTATTTGTACCAAATGATGCGATTTTCTGAGAACGAAACGTTCGAAAAA
1 TTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAA
* * * *
10420 TTGTTCGAAGAAATGGATCGTCTTGAATACGTTAAGGAACCAAAGTTATAAAAAAAACTCAAAAA
66 TTGTTCGAAGAAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAAGAACTCGAAAA
* * * * * *
10485 AGTTTGTA-AAGTTCGGATGTTTGGCCAAAAACAAAGAGAGAAATAATTCTCACATAAATAAGTT
130 AGTTTG-ACAAGTTCGGAAGTTCGGCCAAGAAC-CA-AGAGAAACAATTCTCACATAAATAAATT
10549 TTT
192 TTT
10552 TACAAAAGGA
Statistics
Matches: 1232, Mismatches: 206, Indels: 86
0.81 0.14 0.06
Matches are distributed among these distances:
210 16 0.01
211 40 0.03
212 116 0.09
213 85 0.07
214 364 0.30
215 341 0.28
216 197 0.16
217 72 0.06
218 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (214 bp):
TTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAA
TTGTTCGAAGAAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAA
GTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAAACAATTCTCACATAAATAAATTTTTA
ATCCAAAGACCAAAAGTTG
Found at i:12427 original size:432 final size:429
Alignment explanation
Indices: 5676--24960 Score: 14051
Period size: 432 Copynumber: 44.9 Consensus size: 429
5666 TCACGTAAAT
* *
5676 AAGTT-TTCTACAAAAGGACTA-ACTATTTGGATCAAATGATGCGATTTCCCGAGAATGGAATGC
1 AAGTTGTT-TACAAAATGAC-AGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-
* * * * *
5739 TTGGAAAATTGCTCGAAAGAATCGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
63 TTAGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
* * * **
5804 TTGAAAAAGTTTAACAAGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAATGTTTCTCACATAAA
128 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAA
* * * *
5869 TACA-TTTTTAATCCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAATTGATA
192 TA-AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
* * * * ** *
5933 CGATTT--CTACAA---AA----CG-GAAA-TGTTCGAAAAAATGGTTCGTCTTGAATACTTTAA
256 CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * * ** * *
5987 GGAACCCAAGTTATAAAAGAACACAAAAAAGTTTGCAAAGTTTGGTTGTTCAGCCTAGAACCAAG
321 GGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAAG
* * * * *
6052 AGTGAAATAATTCTTAC-GTAAATAAGTTTTTAATTCAAAGACCGA
385 AGAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * *
6097 AAGTT-TTTACAAAATGACTA-ATTATTTGAACCAAATGATGCGATTTCCCAAGAATGGAATGTT
1 AAGTTGTTTACAAAATGAC-AGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * * * *
6160 TGAAAAAATGCTCGAAAGAATCGATCGTCTTGAATACTTTAAGGAACTGAGGTTATAAAAGTACT
65 AG-AAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
6225 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACATAAAT
129 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAAT
* * * *
6288 AAATTTTTAA-TCCATGAACCAAAAGTTGTTTACAAAATGACAGATTATTAGGACCAAATGATGC
193 AAGTTTTTAATTCAAAG-ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGC
** * * * * * * *
6352 TTTTTCCAGAGAACGGAATGTTTGAAAAATTGTTTGACGAAATGGATCGTCTTGAATACTTTAAG
257 GATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * *
6417 GAACCAAAGATT-TAAAATAACTCAAAAAAGTTTGCAAAGTTTGGAAGTTCGGCCTAGAACCAAG
322 GAACCAAAG-TTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAAG
* * * * * *
6481 AGTGAAATAATTATCACATAAA-AAAGTTTTTAATTCAAAGATCGA
385 AGAGAAACAATTCTCACAGAAATAAA-TTTTTAATTCAAAGACCAA
* * * * * *
6526 AAGATT-TTTACAAAA-GTACTA-ATTATTTGGACCAAATGATGCGATTTTCAGAAAATAGAATT
1 AAG-TTGTTTACAAAATG-AC-AGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG
* * * * * ** *
6588 TTCGGAAAACTGCTCGACGGAATCGATCATCTTGAATACTTTAAGGATTCGAAGTTATAAAAGTA
63 TT-AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* * * * *
6653 CTCAAAAAAGTTTGACAAGTTTGGAAGTTCAGCCAAGAACC-A-AGAGAAACAATTCCCACGTAA
127 CTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAA
* * * *
6716 ATAAATTTTTAATCCAAAGACCAAAAGTAGTTTACAAAATGACAAATTATTTGGACCAAATGATG
191 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
* * * * *
6781 CAATTTCCCGAGAATGGAATGTTCGAAAAATTG-TCCAAAGAAATAGATCATCTTGAATACTTTA
256 CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTA
* * * * * * *
6845 AAGAACAAAAGTTATAAAAGAACTCGAAAAAGTTTGCAAAGTTTGGAAGTTCAGCCTAGAGCCTA
320 AGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAA
* * * * * * *
6910 GAGTGAAATAATTCTCACATAAATAAGTTTCTAATTCAAAGATCGA
384 GAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * *
6956 AAGTTTTTTACAAAAGGACTA-ATTATTTGGACCAAATGATGC-AGTTTCTCGAGAACGGAATGT
1 AAGTTGTTTACAAAATGAC-AGACTATTTGGACCAAATGATGCGA-TTTCCCGAGAATGGAATGT
* * ** * * *
7019 TCAAAAAATTGTTTGAAGGAATTAATCATCTTGAATACTTTAAGGAACCGAA-TATATAATAGTA
64 T-AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGT-TATAAAAGAA
* ** * ** *
7083 CTCGAAAAAGTTGGACAAGTTCAAAAGTGCAACCAAGAACCAAGAGAGAAACAATTATCACATAA
127 CTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAA
** * *
7148 ATAAAATTTTAATCCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGTACCAAATGATG
191 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
* * * * * *
7213 CGATTTCCCGAGAATGGAATGCTCAAAAAATTGCACGAAGTAATCGATCGTGTTGAATA-TTTAA
256 CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * * * *
7277 GGAACCGAAGCTATAAAAGAACTTGAAAAAGTTTGACTACTTCGGAAGTTCGGCTAAGAACCAAG
321 GGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAAG
*** * * *
7342 AGAGAAATGTTTCTCATATAAATAAATTTTTAA-TCTAAAGACAAA
385 AGAGAAACAATTCTCACAGAAATAAATTTTTAATTC-AAAGACCAA
* * ** * * *
7387 AAGTTGTTTACAAAATGACAAATTATTCAGACCAAATGATGCGATTTCCCGAGAACGAAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* ** *
7452 GAAAAATTG-TTCGAAGAAATTAATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
66 G-AAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * *
7516 AGAAAAAGTTT-ATAAAGTTCGGAAGTTTGGCCTAGAACCAAGAGAGAAATAATTCTCACGTAAA
129 CGAAAAAGTTTGA-CAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAA
*
7580 T-A-TATTTT--TT-----A-CAAAAG--G---AC----T---A-ACTATTTGGACCAAATGATG
192 TAAGT-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
* * * * *
7622 TGATTTCCCGAGAATGGAATGCTCGGAAAATTGCTCGAAAGAACT-GATTGTCTTGAATACTTTA
256 CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAA-TGGATCGTCTTGAATACTTTA
* * * * * * * *
7686 AGGAACCGAAG-TAGTAAAAGAACTTGAAAAAGTTTGACAGGCTCGAAAGTTAGACTAAGAACCA
320 AGGAACCAAAGTTA-TAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCA
* ** * *
7750 AGAGAAAAACGTTTCTCACATAAATAAATTTTTAATCCAAAGACCAA
383 AGAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * *
7797 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAACGGAATGTTT
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* * * * *
7862 GAAAAATT-ATTCGAAGAAATTGATCGTCTTGAACACTTTAAGGAACCAAAGTTATAAAAGAACT
66 G-AAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * * * *
7926 CAAAAAAGTTTG-CAAAGTTTGGCAGTTCAGCCTAGAACCAAGAGTGAAATAATTCTCACGTAAA
129 CGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAA
* * * * * *
7990 TAAGTTTTAAATTGAAAGATCGAAAGTTTTTTTACAAAAGGACTA-ATTATTTGGACCAAATGAT
192 TAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGAC-AGATTATTTGGACCAAATGAT
* * * * * *
8054 GCGATTTCCCAAGAACGGAATGTTCAAAAAATTGCTCGAAAGAATCGATCGTCTTTAATACTTTA
255 GCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
** * * * *
8119 AGGAACTGAAGTTATAAATGTACTTGAAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACC-A
320 AGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAA
* *
8183 -AGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAGACCAA
384 GAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * *
8228 AAGTTGTTTACAAAATGACAGATTATTTGGACAAAATGATGCAATTTCCCGAGAACGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-T-
* * * * *
8293 TA-AAAATTG-TTCGAAGAAATGGATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAAC
64 TAGAAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
** * * * *
8356 TCGAAACTGTTTG-CAAAG-T---AAGTTCGGCCTAGAACCATGAGTGAAATAATTCTCACATAA
128 TCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAA
* * * * *
8416 ATAAGTTTTTAATTTAAAGACCGAAAGTTTTTTACAAAAGGACTA-ATTATTTGGGCCAAATGAT
191 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGAT
* * * ** * *
8480 GCGATATCCC-AGGAATGAAATG-CCTTAAAATTGCTCGAAGGAATCGATCGTCTTGAATTCTTT
255 GCGATTTCCCGA-GAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* * * *
8543 AAGGAACCGAAGATATAAAAGTACTCGACAAAGTTTGACAAGTTCGGAAGTTCAGG-CAAGAACC
319 AAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTC-GGCCAAGAACC
* * * *
8607 AAGAGAGAAACAGTTCTCACATAAATAAAATTTTAATCCAAAGACCAA
382 AAGAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * *
8655 AAGTTGTTTATAAAATGACAGAATATTTGTACCAAATGATGCGATTTCCC-AGAACGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* * * * *
8719 GAAAAATTG-TTCGAAGAAAT-GAATCATCTTGAATACTTTAAGGAACCAAAGTTTTAAAAAAAA
66 G-AAAATTGCTT-GAAGGAATCG-ATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAGAA
* * * * *
8782 CTCGAAGAAGTTTGTA-AAGTTCGGAAG-TCTGGCCTAGAACGAATAGAGAAATAATTCTCACAT
127 CTCGAAAAAGTTTG-ACAAGTTCGGAAGTTC-GGCCAAGAACCAAGAGAGAAA-CATTCTCACAT
* * * * *
8845 AAATAAG---AT-ATT----TA-CAAAAG--G---AC----T---A-ACTATTTGGATCAAGTGA
189 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGA
* * * *
8888 TGCGATTTCCCGAGAATGGAATGCTC-AGAGAATTGCTCGAAGGAATCGATCGTCTTGAATACTC
254 TGCGATTTCCCGAGAATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* * * * * * *
8952 TAAGCAACCGAAGCTATAAGAGAACTTGAAAAAGTTTGACTAGTTCGGAAGTTTGGCCAAGAACC
318 TAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACC
* * *
9017 AAGAGAGAAAC-ATTCTCCCATAAATAAATTTTTAATCCAAAGACCAA
382 AAGAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * * ** * * *
9064 AAGTTGTTTACAAAATAACAGATTTTTTGGAACTAATGATG-GATTTCTTGAGTACGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* * * **
9128 GAAAAATTGTTTGAAGAAATTGATCGTCTTGAATACTTTAAGGAACTAAAGTTATAAAAGAACTC
66 G-AAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * *
9193 GAAAAAGTTTG-CAAAGCTT-GGCAGTTCAGCCTAGAACCAAGAGTGAAACAATTCTCACGTAAT
130 GAAAAAGTTTGAC-AAG-TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAA
* * * * * *
9256 TAAGTTTTTGATTCAAAGACTAAAAGTTTTTTTACAAAAGGACTCG-TTATTTGGAAC-AATGAT
192 TAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGAC-AGATTATTTGGACCAAATGAT
* * *
9319 GCGATTTCCCAATAATGGAATGTTCGAAAAATTGCAT-GAAGGAATCGATCGTCTTGAATACTTT
255 GCGATTTCCCGAGAATGGAATGTTCGAAAAATTGC-TCGAAGGAATGGATCGTCTTGAATACTTT
** * * *
9383 AAGGAACTTAAGTTATAAACGTACTCGAAAAAGTTTGACAAGTTCTGAAGTTCGGCCAAGAACC-
319 AAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCA
* *
9447 A-AGAGAAACAATTCTCACATAAATAAATTTTTAA-TCCAAGAACCAA
383 AGAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAG-ACCAA
* * *
9493 AAGTTGTTTACAAAATGAGAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* * * * *
9558 GACAAATTG-TTCGACGAAATGGATCGTCTTGAATACTTTAAGAAACCAAAGTTATAAAAGAACT
66 GA-AAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * *
9622 CGAAAAAGTTTG-CAATGTTTGGAAGTTCGGCCTAGAACCAAGAGTGAAATAATTATCACATAAC
129 CGAAAAAGTTTGACAA-GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAA
* * *
9686 TAAGTTTTTAATTCAAATACCGAAAGTT-TTTACAAAATGACTA-ATTATTTGGACCGAATGATG
192 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATG
* ** * *
9749 AGATTTCTAGAAAATGGAATGTTCGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAA
256 CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * * *
9814 GGAACCGACGTTATAAAAGTACTCAAAAAAGTTTGACAAGTTCGGAAGTTCGACCAAGAACC-A-
321 GGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAAG
* * *
9877 AGAGAAACAATTCTCACATAAATAAATTCTTAATCCAAAGACCAA
385 AGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * * *
9922 AAGTTGTTTA-AAAATTGACAGATTATTTAGACCAAATGCTGCAATTTCTCGAGAACGGAATGTT
1 AAGTTGTTTACAAAA-TGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * * **
9986 CGAAAAATTG-TTCGAAGAAATGGATCATCTTGAATACTTTAAGGAGCAAAAGTTATAAAAGAAC
65 AG-AAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
* * * * * * *
10050 TCGAAAAAG-TTCACGAAG-T---AAGTTCGGCCTAGAACCACGAGTGAAATAATTCTTACGTAA
128 TCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAA
* *
10110 ATAAGTTTTTAATTCAAAGACCGAAAGTT-TTCTACAAAAGGACTA-ATTATTTGGACCAAATGA
191 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTT-TACAAAATGAC-AGATTATTTGGACCAAATGA
* ** ** *
10173 TGCGATTTCCCGAGAATGGAATGTTCAAAAAATTGCTCGAAGGAATCTATAATCTCG-ATACTTT
254 TGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* * * * *
10237 AAGGAACCGAAGATATAAAAGTACTCGAAAAAGTTTGACAAGTTCAGAAGTTCAGCCAAGAACCA
319 AAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCA
* * * **
10302 AGAGAGAAACAATTCTCACATAAATAAAATTTTAATCCAAAGACTTA
383 AGAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * * * * *
10349 AAGTTGTTTACAAAATGACAGATTATTTGTACCAAATGATGCGATTTTCTGAGAACGAAACGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* * * * *
10414 GAAAAATTG-TTCGAAGAAATGGATCGTCTTGAATACGTTAAGGAACCAAAGTTATAAAAAAAAC
66 G-AAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAGAAC
* * * * * *
10478 TCAAAAAAGTTTGTA-AAGTTCGGATGTTTGGCCAAAAACAAAGAGAGAAATAATTCTCACATAA
128 TCGAAAAAGTTTG-ACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAA
* * *
10542 ATAAG-TTTT--TT-----A-CAAAAG--G---AC----T---A-ACTATTTGAACCAAGTGATG
191 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
* * * ** * * *
10585 CGATTTCCCGAGAATGGAATGCTTAG-AGAGTTGCTC-AGAGGAATCAATCATCTTGAATAATCT
256 CGATTTCCCGAGAATGGAATG-TTCGAAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTT
* * * * * * *
10648 AAGGAACCGAAGCTATAAGAGAACTTGAAAAAGTTTGACTAGTTCGGAAGTTCGGTCAAGATCCA
319 AAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCA
* ** * * *
10713 AGACAGAAACGTTTCTTACATAAATAAATTTTTAATCCAAAGACCAA
383 AGAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * * * ** * *
10760 AAGTTGTGTACAAAATAATAGATTATTTGGACCTAATAATGCGATTTCTTGAGAACGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* * * * *
10825 GAAAAATTG-TTCGAAGAAATTGATGGTCTTGAATACTTTAACGAACCAAAGTTATAAAAGAACT
66 G-AAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * * * * * **
10889 CAAAAAAGTTTG-CAAAGTTTGGTAGTTCAGCCTAGAGCCAAGGGTGAAATAATTCTCATGTAAA
129 CGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAA
** * *
10953 TAAGTTTTTAATTCAAAGACTTAAAGTT-TTTAACAAAAGGACTTG-TTATTTGGACC-AATGAT
192 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTT-ACAAAATGAC-AGATTATTTGGACCAAATGAT
* * * * *
11015 ACGATTTTCCAAGAATGGAATGTTCGAAAAATTGCGCGAAGGAATCGATCGTCTTGAATACTTTA
255 GCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
* * * * * * * *
11080 AGAAACCGAAGTTATAAACGTACTAGAGAAAGTTTAACAAGTTCTGAAGTTCGGCCAAGAACC-A
320 AGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAA
* * *
11144 -AGAGAAACAATTCTCGCATAAAT-AATATTTTAA-TCCAAGAACCAA
384 GAGAGAAACAATTCTCACAGAAATAAAT-TTTTAATTCAAAG-ACCAA
* *
11189 AAGTTGTTTACAAAATGAGAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT-
* * * * *
11254 AAAAAATTG-TTCGACGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
65 AGAAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * *
11318 CGAAAAAGTTTG-CAAAGTTTGGAAGTTCGGCCTAGAACCAAGAGTG-AA-A-TGTCACGTAAAT
129 CGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACATTCTCACATAAAT
* * * *
11379 AAGTTTTTAATTCAAAGACCGAAAGTTTTTTACAAAAGGACTA-ATTATTTGGACCAAATGATGA
193 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGC
* * * ** * *
11443 AATTTCCAGAAAATGGAATGTTCGAAAAATTGCTCGAATAAATTGATCGTCATGAATACTTTAAG
257 GATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* *
11508 GAACCAAAGTTAAAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACC-A-A
322 GAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAAGA
* * *
11571 GAGAAACAATTCTCACATAAATAAAATTTTAATCCAAAGACCAA
386 GAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * ** * * * *
11615 AATTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGAAATTTCCTGAGAACGAAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* ** * * **
11680 GAAAAATTG-TTCGAAGAAAAGGATCATCTTGAATACTTTAAGGAGCAAAAGTTATAAAAGAACT
66 G-AAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * *
11744 CGAAAAAGTTT-ACAAAG-T---AAGTTCGGCCTAGAACCACGAGTGAAATAATTCTTACGTAAA
129 CGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAA
*
11804 TAAGTTTTTAATTCAAAGACCGAAAA-TT-TTATACAAAAGGACTA-ATTATTTGGACCAAATGA
192 TAAGTTTTTAATTCAAAGACC-AAAAGTTGTT-TACAAAATGAC-AGATTATTTGGACCAAATGA
* * * * *
11866 TGCGATTTCCCGAGAATGAAATGTTCAAAAAATTGATCGAAGGAATCGATCGTCTTCAATACTTT
254 TGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* * * * *
11931 AAGGAATCGAAGATATAAAAGTACTC-AACAAAGTTTGAAAAGTTCGAAAGTTCGGCCAAGAACC
319 AAGGAACCAAAGTTATAAAAGAACTCGAA-AAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACC
* *
11995 AAGAGAGAAACAATTCTCACAGAAATAAAATTTTAATCCAAAGACCAA
382 AAGAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * *
12043 AAGTTGTTTACAAAATGATAGATTATTTTGACCAAATGATGCGATTTCCCGAGAATGGAATGCTT
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-TT
* * * * * * *
12108 AGAAAATTGCTTGAAGGAATCGATTGTCTTCAATACTCTATGAAACCGAAGCTATAAAAGAACTT
65 AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * *
12173 GAAAAAGTTTGACTAGTTCGAAAGTTAGGCCAAGAACCAAGAGAGAAACATTACTCACATAAATA
130 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACATT-CTCACATAAATA
* * * *
12238 AATTTTTAATCCTAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCTAATGATGCGA
194 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGA
* * ** * *
12303 TTTCCCGAGAACGGAATGTTCGAAAAATTGTTCGAAAAAATAGATCATCTTGAATACTTTAAGGA
259 TTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * *
12368 ACCAAAGTTATAAAAGAGCTCGAAAAAGTTTGCAAAGTTTGGAAGTTTGGCCTAGAACCAAGCGA
324 ACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAAGAGA
* * * *
12433 GAAATAATTCTTAC-GTAAATAAGTTTTTAATTCAAAGACCGA
388 GAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * * * * *
12475 ACGTTTTTTACAAAAGGACTA-ACTATTTGGACCAAATGATGCAATTTCTCGAGAATGTAATGTT
1 AAGTTGTTTACAAAATGAC-AGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * * *
12539 CAAAAAATTGCTTGAACGAATCGGTAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAAAACT
65 -AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * ** **
12604 C-AAAAATGCTTGGCAAGTTTAGAAGTTCAACCAAGAA--ATA-AGAGAAACAATTCTCACATAA
129 CGAAAAA-GTTTGACAAGTTCGGAAGTTCGGCCAAGAACCA-AGAGAGAAAC-ATTCTCACATAA
* * * *
12665 ATAAATTTTTAATCCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGTTA
191 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
* * * ** *
12730 AGATTTCCCGAGCATGGAATGTTTTG-AAAATTGCTCGAAGGAATGGATTATCTTGTATACTTTA
256 CGATTTCCCGAGAATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
* * * * * * *
12794 AGGATCCGAAGTTATAAAATAACTC-ATAAAAGTTTGACAAGTTCGAAAGTTCAG-TAAAAACCA
320 AGGAACCAAAGTTATAAAAGAACTCGA-AAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCA
* * * * *
12857 AGGGAGAAACCATTCTCTC-GTAAATAAGTTTTTAATTCTAAGA-CAGA
383 AGAGAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCA-A
* * * * * * * *
12904 ATGTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCTATTTCTCGAGCATGAAATATTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT-
* * * * * * * **
12969 AAAAAATTGGTCGAAGGAAT-GAATCGTCTTGAATACTGTAAGGAATCAAAGCTATAATTGAACT
65 AGAAAATTGCTTGAAGGAATCG-ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * ** * * * ** *
13033 CAAAAAAGTTTGA-AATGTTTGGAAGTTCAACCAAGAACCAAGAGAGAAAGAATACTAATGTTAA
129 CGAAAAAGTTTGACAA-GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAA
** * * * * *** * *
13097 TAAGTTTTTAATTCAAAGAGTAAAAGTTGTTT--AAAATAACAAACTACTTGGTTGAAATGACGT
192 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGC
* **** * * * ** *
13160 AATTTTTTTAGCATGAAATGGTC-AGAAAATTTTTCGATGGAATGGATCGTCTTGAATACTTTAA
257 GATTTCCCGAGAATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * * * * ** * * *
13224 AGAACCAAAGTTACAAAAAAACTTGTAAAAGTTTGACATGTTTAGATGTTCAGCCAAGAGCCAAG
321 GGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAAG
* *
13289 AGAGAAACAGTTCTCAC-GTAAATAAATCTTTAATTCAAAGACCAA
385 AGAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * * * * ** *
13334 AAGTTGTTTACGAACTGACTA-ACTATTTAGACCAAATCATGCGACTTCTTGAGCATGGAATGTT
1 AAGTTGTTTACAAAATGAC-AGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * * *
13398 CA-AAATTTTG-TTAGAAGGAATGGATCATATTGTATACTTTTAAGGGACCGAAGTTA-AAAAGA
65 -AGAAA-ATTGCTT-GAAGGAATCGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGA
* *** * * **
13460 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTTAACTAAGAACCAAGAGAGAAATAATTCTCATGTA
126 ACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATA
* *
13525 AATAAGTTTTTAATCCAAAGACCAAAAGTT-TTTACAAAATAACAGATTATTTGGACCAAATGAT
190 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGAT
* * * *
13589 GCAATTTCCCGAGAATCGATTGTTCGAAAAATTGCTCGAAGGACTGGATCGTCTTGAATACTTTA
255 GCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
* * * **
13654 AGAAACTAAAGTTATAAAAGAACTTGAAAAAGTTTGAAAAGTTCGGAAGTTAAGCCAAGAACCAA
320 AGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAA
* * * **
13719 GAGAGAAACAATTCTTACATAAATAAGTTTTTAATTCAAAGACTGA
384 GAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * ** * * **
13765 AAGTTTTTTACAAAAGGACAAACTATTTGGACCAAATGGTATGATTTCTCGA-AGCTAAAATGTT
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGA-ATGGAATGTT
* * * * *
13829 AGGAAAATTGCTCGAAAGAATCTATCATCTTGAATAATTTAAGGAACCGAAGTTATAAAAGAACT
65 A-GAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * *
13894 CAAAAAAGTTTGACAAGTTCGGAACTTCGGCGAAGAACGAAGAAAGAAAAAATTCTCACATAAAT
129 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAG-AAACATTCTCACATAAAT
* * * * * * *
13959 AAGTTTTTTATTCAAAGACCGAAAGTTGGTTACAAAAGGATAAAATATTTGGACCAAATGATGCG
193 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCG
* * * * * *
14024 ATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATTGTCTTGAATACTTTAGGG
258 ATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * * * * *
14089 AACTGAAA-TTATAAAATAACTTGTAAAAGTTTGACAATTTCGAAAGCTT-AGTCAAGAACCAAT
323 AAC-CAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAG-TTCGGCCAAGAACCAA-
* * * *
14152 G-GAGAAACCATTCTCAC-GTAAATAAGTTTTTAATTCTAAGACGAA
384 GAGAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * *
14197 AAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTACCGAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT-
* * * *
14262 AGATACTTG-TTCGAAGGAATCGATAGTCATGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
65 AGAAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * *
14326 CGAAAAATTTTGACAAGTTCGGAAGTTCGGTCAAGAAACAAGAGAGAAACAATTCTCACAAAAAA
129 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAAT
* * * * * *
14391 AAATTTTTAATCCAAAGACAAAAAGTTG---------TGATAGATTATTTGGACCAAATGACGGG
193 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCG
* * * * *
14447 ATTTCCCGATG-ACGGAATGTTCGAAAATTTGTTCAAAGAAATGGATCGTCTTGAATACTTTAAG
258 ATTTCCCGA-GAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
** *
14511 GAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCAACCTAGAACCAAGA
322 GAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAAGA
* **
14576 GAGAAATAATTCTCAC-GTAAATAGGTTTTTAATTCAAAGACCAA
386 GAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
14620 AAG-TGTTTTACAAAATGACTA-ACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGT
1 AAGTTG-TTTACAAAATGAC-AGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-
* * * * *
14683 TTGGAAAATTTCATGAAGGAATCGATCGTTTTCAATACTTTAAGGAACCGAAGTTATAAAAGAAC
63 TTAGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
* * * *
14748 TCGAAAAAGTTTGACAAGTTTGGAAGTTCGGCCAAGAACCAATAGAGAAATAATTCTCATATAAA
128 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAA
* * ** *
14813 TAAATTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACTGGCTATTTGGACCAAATTATGC
192 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGC
* * *** * * * * * *
14878 AATTTCTCGAGAACAAAATGTTCAAAAAATTGTTTGAAGAAATGTATCGTCATGAATACTTTAAG
257 GATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * *
14943 GAACCAAAGTTATAAAAGAACTTGAAAAAGTTTGTAAAGTTCGGAAGTTTGGCCTAGAACCAAGA
322 GAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAAGA
* * * *
15008 GAGAAATAATTCCCAC-GTAAATATA-TTTT--TT-----A-CGA
386 GAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* *
15043 AAG--G---AC----T---A-ACTATTTGGACCAAATGATGAGATTTCCCGAGAATGGAATGCTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-TT
* ** * * *
15095 GGAAAATTGCTCAAAAGAA-CTGATCATCTTGAATACTTTAAGGAACCGAAGTAATAAAAGAACT
65 AGAAAATTGCTTGAAGGAATC-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * ** * * *
15159 TGAAAAAGTTTGATAGGTTCAAAAGTTAGACCAAGAACCAAGAGAGAAACGTTTCTCACATAAAT
129 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAAT
* * * *
15224 AAATTTTTAATCCAAAGACCAAAAGTTGTTTACAAACTGACAGATTATTTGGAACAAATGATGCG
193 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCG
* * * * *
15289 ATTTCCCGAGAACGGAATGTTTGAAAAATTGTTCGAAGAAATGGATCGTCTTGAACACTTTAAGG
258 ATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * *
15354 AACCAAAGTTATAAAAGAACTCAAAAAAGTTTGCAAAGTTTGGCAA-TTCAGCCTAGAACCAAGA
323 AACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGG-AAGTTCGGCCAAGAACCAAGA
* * * * * *
15418 GTGAAATAATTATCAC-GTAAATAAGTTTTTAATTCAAAGATCGA
386 GAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * * * *
15462 AAGTTTTTTTACAAAAGGA-ATAATTATTTGGACCAAATGATGCGATTTCCCAAGAATGGAATGT
1 AAG-TTGTTTACAAAATGACA-GACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGT
* * * * * *
15526 TCGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAGGTAC
64 TAG-AAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
* *
15591 TCGAAAAGGTTTGACAAGTTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCATATAAA
128 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAA
* * * * *
15654 TAAATTCTTAATCCAAAGACCAAAAGTTGTTTA-AAAATTGACAGATTATTTAGACCAAATGCTG
192 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-TGACAGATTATTTGGACCAAATGATG
* * * * *
15718 CAATTTCCCGAGAACGGAATGTTCGAAAAATTGTTCGAAGAAATGGATCATCTTGAATACTTTAA
256 CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * ** * * * * **
15783 GGAGCAAAAGTTAGAAAAGAACTCGAGAATAAGTTTTTAA-TTC-AAAG-ACCG-AAAGTTTTCT
321 GGAACCAAAGTTATAAAAGAACTCGA-AA-AAGTTTGAAAGTTCGGAAGTTCGGCCAAG--AAC-
* ** * ** ** ** * * *
15844 ACAAAAG-GACTAATTATT-TGGACCA-AATGATGCGATTTCCCGAGAATGGAATGTTCGAA
381 -CAAGAGAGA--AACAATTCT-CA-CAGAA--AT-AAATTT----TTAATTCAAAG-ACCAA
* ** * * * *** * * *
15903 AAATTGCTCGA-AGGAATCTATAATCTTGAATACTTTAAGGAACCAAA-GATATAAAAGTACTCA
1 AAGTTG-TTTACA--AA---ATGA-C-AGACTA-TTT--GG-ACCAAATG--ATGCGATTTC-CC
* * * * * ** * * * *
15966 AAAAAGTTTGACAAGTTCAG-AAGTTCAGCCAAGAACCGAGAGAGAAACAATTC-TCACATAAAT
51 GAGAA--TGGA-ATGTT-AGAAAATT--G-C-----TTGA-AG-GAATCGA-TCGT--CTTGAA-
* ** * * * * * *
16029 TAAATTTTAATCCAAAGACCAAAAGTTGTTTACAGAA-T-GACAGATTA-TTTGTACCGAATGAT
98 T--ACTTTAA---GGA-ACC-GAAGTT-ATAAAAGAACTCGA-A-A-AAGTTTG-A-C-AA-GTT
* * * * * * * * *
16091 -GCG-ATTTC--CCGAGAACGAA-ATGTTCA-AAAAATTGTTCAAAGAAATGGATCGTCTTAAAT
148 CG-GAAGTTCGGCCAAGAACCAAGA-G---AGAAACATT-CTCACATAAAT--A-AGT-TT--TT
* * * * ** * * * *
16150 ATTTTAAGGAACC-AAAGTTATAAAAAAAACTCGA-A-A-AAGTTT-G--TAAA-G-TTCGTAAG
201 AATTCAAAG-ACCAAAAGTTGTTTACAAAA-T-GACAGATTA-TTTGGACCAAATGATGCG--A-
* * * * ** ** ** ** *
16206 TTTGGCCTAGAA-CGAATAG--AGAAATAATT-CTC-ACATAAATAAGTTTTTTACAAAAGGACT
259 TTT-CCCGAGAATGGAAT-GTTCGAAA-AATTGCTCGA-AGGAAT--GGATCGT-C---TTGAAT
* * *** *** * ** *
16266 AACTATT-TGG-ACC-AAGTGATGCGATTTCCCGAGAATGGAATGCTCAGAGAATTGTACGAAGG
314 -ACT-TTAAGGAACCAAAGTTATAAAAGAACTCGA-AA---AA-G-TTTGA-AA--GTTC---GG
* * * * ** * * * * * * * ** *
16328 AATCGATCGTCTTGAATAGTCTA-AG-GAACCGAAGCTATAAGAGAACTTGAAACAGTTTGA--C
365 AA--GTTCGGC--CAAGAACCAAGAGAGAAAC-AA-TTCTCACAGAA-AT-AAA-TTTTTAATTC
* ** *
16389 -TAGTTCAG
421 AAAGACCAA
*** * * * ** * * ** ** *
16397 AAGTTCGGCCA-AGAACCAAGACAGAAATGTTTCTCACATAAATAAAT--TTTTAATCCAAAGAC
1 AAGTT-GTTTACA-AA--ATGACAG-ACTATTT-GGAC-CAAAT-GATGCGATT--TCCCGAGAA
*** * * * * * * *
16459 CAAAAGTTGTTTACAAAATAACAGATT-ATTTAGACCTAAT-GAT-G-C--GATTTC-TTAA-GT
56 TGGAA--TG-TTAGAAAAT---TGCTTGA---AG---GAATCGATCGTCTTGAATACTTTAAGGA
* **** * * * ***
16516 ACGGAATGTTCGA-AAAATTGTTGGAAGAAA--TTGATC--G-TCTTGAA-TAC-TTTAAGGAAC
109 ACCGAA-GTT--ATAAAAGAACTCGAA-AAAGTTTGA-CAAGTTC-GGAAGTTCGGCCAA-GAAC
* ** ** * * *
16573 CAA-AGTTATAAA-AGAACTCGA-A-AAAGTTTGCAAAGTTTGGCAGTTCAGCCTAGAACCAAGA
167 CAAGAG--AGAAACA-TTCTC-ACATAAA---T---AAGTTT-TTAATTCA---AAG-ACCAAAA
** ** * * * ** * * * **
16634 G-TG-AAACAATTCTTACGTAAATAAGTTTTTAATTCAAA-GACTGAAAGTTTTTTAC-AGAA-G
217 GTTGTTTACAA-AATGAC--AGATTA--TTTGGA-CCAAATGA-TG--CG-ATTTCCCGAGAATG
* * ** * * * ** * *
16694 GACCAGTTATTTGGACCAATGATGCGATTTCCCAA-AAATGAAAT-GT-TCAAAAATTTGCGTGA
272 GA--A--T-GTTCGAAAAAT--TGC----T-CGAAGGAATG-GATCGTCTTGAATACTT---T-A
* * *
16756 AGGCATCAATCGTCT-TGAATACTTTATGGAA-TCGAAGTTATAAACGTACTCAAAAAAGTTTGA
320 AGGAACCAA-AGT-TAT-AA-A----A--GAACTCG------------------AAAAAGTTTGA
* * * *
16819 CAAGTTCTGAAGTTCTGTCAAGAACC-A-AGAGAAACAATTCTCACATAAATAAATTTTTAA-TC
357 -AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACAGAAATAAATTTTTAATTC
* *
16881 CAGGAACCAA
421 AAAG-ACCAA
* * *
16891 AAGTTGTTTACAAAATGACAGATTATTTGGATCAAATGATGCGATTTCCCGAGAATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* * * * * *
16956 GAAAAATT-ATTCGACGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGACCT
66 G-AAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * *
17020 CGAAAAAGTTT-TCAAAGTTTGGAAGTTCGGCCTAA-AACCAAGAGTGAAATAATTATCACGTAA
129 CGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCC-AAGAACCAAGAGAGAAA-CATTCTCACATAA
* * * *
17083 CTAAGTTTTTAATTCAAAGACCAAAAGTTCTTTACAAAAGGGCTA-ATTATTTGGACCAAATGAT
191 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGAT
* ** * * *
17147 GAGATTTCTAGAAAATGGAATGTTTGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTA
255 GCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
* *
17212 AGGAACCTAAGTTATAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACC-A
320 AGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAA
* *
17276 -AGAGAAACAATTCTCACATAAATAAATTTTTAATCCAAAGACCAA
384 GAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * * * *
17321 AAGTTGTTTACAAAATAACAGATTATTTGGACCAAATGATGCAATTTCTCGAGAACGAAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* * * * **
17386 GAAAAATTG-TTCGAAGAAATGGATCATCTTGAATACTTTAAGGAGCAAAAGTTATAAAAGAACT
66 G-AAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * *
17450 CGAAAAAGTTT-ACAAAG-T---AAGTTCGGCCCAGAACCACGAGTGAAATAATTCTTACGTAAA
129 CGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAA
* * *
17510 TAAGTTTTTAATTCAAAGACCGAAAGTTTTTTACAAAAGGACTA-ATTATTTGGACCAAATGATG
192 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATG
* * * * * *
17574 TGATTTCTCGAGAATGAAATGTTCGGAAAATTGATCGAAGGAATCGATCGTCTTGAATACTTTAA
256 CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * * * *
17639 GGAACCGAAGATATAAAAGTACTTGACAAAGTTTGAAAAGTTCGAAAGTTCGGCCAAGAACCAAG
321 GGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAAG
* * * *
17704 AGAGAAAC-ATGTCTCACAG-AATAAAATTTTAATCCCAATACCAA
385 AGAGAAACAAT-TCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * *
17748 AAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGTGATTTACCGAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT-
* * * * * *
17813 AGATACTTGCTCGAAGGAATCGATAGTCATGAATACTTTAAGGAACCGAAGTTATAAAATAACTC
65 AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * *
17878 GAAAAAGTTTGACAAGTTCAGAAGTTCGGTCAAGAAACAAGAGAGAAACAATTCTCACAAAAATA
130 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAATA
* *
17943 AATTTTTAATCCAAAGACCAAAAGTTG---------TGACAGATTATTTGGACCAAATGATGCGA
194 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGA
* ** * * *
17999 TTTCCCGAGGACAGAATGTTCGAAAAATTGCTCAAAGAAATGGATCTTCTTGAATACTTTAAGGA
259 TTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * *
18064 ACCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAGTTCGGAAGTTTGGCCTAGAACTAAGAGA
324 ACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGA
* ** *
18129 GAAATAATTCTCAC-GTAAATAGGTTTTTAATTGAAAGACCAA
388 GAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * *
18171 AAGTTTTTTACAAAATGATTA-ACTATTTGGACCAAATGATGCGATTTCCCGAGAATAGAATGTT
1 AAGTTGTTTACAAAATGA-CAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-T
* * * * * * *
18235 TGGAAAATTTCATGAAGGAATTGATCATTTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
64 TAGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * *
18300 CGAAAAAGTTTGACAAGTTCAGATGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCATATAAAT
129 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAAT
** * *
18365 AAAATTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACTG-TCTATTTGGACCAAATGATGC
193 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGAT-TATTTGGACCAAATGATGC
** *** * * * *
18429 GATTTCTTGAGAAAAAAATGTTCGAAAAATTGTTTGAAGAAATGTATCGTCTTGAATACTTTAAG
257 GATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * * * * * *
18494 GAGCCAAAGTTATAAAAGAATTCGAAAAAGTGTGTAAAGCTAGAAAGTTTGGCCTAGATCCAAGA
322 GAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAAGA
* * *
18559 GGGAAATAATTCTCAC-GTAAAT-AAGTTTT--TT-----A-CAA
386 GAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* *
18594 AAG--G---AC----T---A-ACTATTTTGACCAAATGATGTGATTTCCCGAGAATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT-
* ** *
18646 CGAAAATTGCTCAAAAGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
65 AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * *
18711 GAAAAAGTTTAACAAGTTCAGAAGTTCNGCCAAGAACCAAGAGAGAAACAATTCTCATATAAATA
130 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAATA
* * * * *
18776 AATTTTTAATCCAAAGACCAAAAGTTGTTTATAAAATGACAGATTCTTTGGATCAAATGATGCGA
194 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGA
* * * * * * *
18841 TTTCTCGAGAACGAAATATTTGAAAAAAATT--TCGAAGAAATGGATCGTATTGAATACTTTAAG
259 TTTCCCGAGAATGGAATGTTCG--AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * ** * *
18904 GAACCAAAGTTATAAAAGGACTCGAAAATGTTTGAAAAGTTTGAAAGTTTAGCCTAGAACCAAAA
322 GAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAAGA
* ** * *
18969 GATAATTAATTCTCA-TGTAAATAATAAGTTTTTAATTCAAAGACCGA
386 GAGAAACAATTCTCACAG-AAAT-A-AA-TTTTTAATTCAAAGACCAA
* * * * *
19016 AAGTTTTTTAC-AAAGGAACTA-ACCATTTGGACCAAATGATGCAATTTCTCGAGAATGGAATGT
1 AAGTTGTTTACAAAATG-AC-AGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-
* * * * *
19079 TTGGAAAATTGCTAGAAGGAATCGATCATCCTAAATACTTTAAGGAACCGAAGTTATAAAAGAAC
63 TTAGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
*
19144 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACTAAGAGAGAAACAATTCTCACATAAA
128 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAA
* * * * * * * * *
19209 TAAGTTTTTAATTCAAACACC-GAAGTTATTTACAAAAGGATAAAATATTTGGGA-AAAATTATG
192 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTT-GGACCAAATGATG
* * * * * * *
19272 C-ACTCTCTCGAGCATGGAATGTTTGGAAAATTGCTCGAAAGAATGGATTGTCTTGAATACTTTA
256 CGA-TTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
** * * * * * ****
19336 AGGAACTGAAGTTATAAAATAACTTGTAAAAGTTTGGCAAGTTCGAAAGTTCAATAAAGAACCAA
320 AGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTT-GAAAGTTCGGAAGTTCGGCCAAGAACCAA
* * * * *
19401 GAGAGAAACCATTCTTA-TGTAAATAAGTTTTTAATTCTAAGACCAA
384 GAGAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * * * *
19447 AAGTTGTTTACAAAATGACAAACTATTTGCACCAAATGATGCGATTTCCTGAGCAT-GAA--AT-
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* * ** * *
19508 G----TT-C--GAAGGAATGGATCGTCTTGAATACTGTAAGGAAATGAAGCTATAATAGAACTCG
66 GAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * *
19566 AAAAAGTTTGGA-AGGCTT-GGAAGTTCGACCAACAACCAAGAGAGAAACCATTCTCACTTAAAT
131 AAAAAGTTT-GACAAG-TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAAT
* ** * * * * * * * *
19629 AAGTTTTTAATTCAAAAAGTAATAGTTGTTTACAAAAAGACAAACTACTTGGTCAAAATGATGCA
193 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCG
* * * * * * *
19694 ATTTCTCGAGAATGGAATGCTT-GGAAAATGGATTGAAGGAATAGATTGTCTTGAATACTTTAAG
258 ATTTCCCGAGAATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * * *
19758 GAACCAAAGTTATAAAAGAACT-TATAAAAGTTTGACATGTTC-AAATGTTC-GACATGAACCAG
322 GAACCAAAGTTATAAAAGAACTCGA-AAAAGTTTGA-AAGTTCGGAA-GTTCGGCCAAGAACCAA
* * * *
19820 GAGAGAGACAATTTTCAC-GTAAATAAGTCTTTAATTCAAAGACCAA
384 GAGAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * * * * * *
19866 AAGTTGTTTACGAAATGACAAACTATTCGGACCTAATGATGCGATTTCTCAAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT-
* * * * * * *
19931 GGAAAATTGCTAGAAGGAATGGATTGCCTTGAACACTTTAAGGAACCAAAGTTA-AAAAGAACT-
65 AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * * * *
19994 AATAAAATTTTGACAAATTTGGAAGTTCGACTAAGAACCAAGAGAGAAATAATTCTCACGTAAAT
130 GA-AAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAAT
* * * * * *
20059 AAGTTTTTAATCCAAAGTCCAAAAGTTGTTTACAAAATAACAGATTATTTAGACCAAATTATGCA
193 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCG
* * * * * * *
20124 ATTTCCCAAGAATCGAATGTTCGAAAAATTACTCCACGAAATAGATCGTCTTGAATACTTTAAGG
258 ATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * *
20189 AACCAAAGTTATAAAAAAACTCGAAAAAGATTGAAAAGTTTGGAAGTTCAGCCAAGAACCAAGAG
323 AACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAAGAG
* * **
20254 AGAAACAATTCTCACATAAAT-AATTTTT--GT-AAAGACTGA
387 AGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * * * ** ** *
20293 AAGTTTTTTTACAAAAGGACAAACTATTTTGGACCAAATGGTGCTATTTTTCTAAGGTTCGAATT
1 AAG-TTGTTTACAAAATGACAGACTA-TTTGGACCAAATGATGCGA-TTTCCCGAGAATGGAA-T
* * * * * *
20358 TTTGGAAAATTGCTCGAAGGAATCGATCGTCTTGAATATTTTAACGAACCGAAATTATAAAAGAA
62 GTTAGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* * * *
20423 CTTGAGAAAGTTTGACAAGCTCGAAAGTTCGGCCAAGAACCAA-A-AGAAACAATTCTCACATAA
127 CTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAA
* * *
20486 ATAAGTTTTTAATCCAAAGACCAAAAGTTCTTTACAAAATGACAGATTATTTGTACCAAATGATG
191 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
* * ** * * *
20551 CGATTT-TCGAGAGTGGAATGTTTAAAAAATTTCTCGAAGGAATGGATTGCCTTGAATACTTTAA
256 CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * *
20615 GGAAACGAAA-TTATAAATGAACTCGAAAAAGTTGGAAAAGTTTGGAAGTTCGGCCAAGAACCAA
321 GG-AACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAA
* * *
20679 GAGAGAAACCAA-TCTCA-TGTAAATAAGTTTTTAATTCAAAGACCGA
384 GAGAGAAA-CAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * * ** * *
20725 AAGTTTTTTACAAAAAGACAAACTATTTGGACCAAATGATGCGATTTTTCAAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT-
* ** * * * * *
20790 AGAAAATTACTTGAAGGAATCGATTATGTTGAAAACTTTAAGGAATCAAAGTTTTAAAAGAACTC
65 AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * *
20855 AAAAAATTTTG-CAAAGTTCAGAAGTTTGTCCAAGAACCAGGAGAGAAACAATTCTCACATAAAT
130 GAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAAT
* * * * * *
20919 AGGTCTTTAATCCAAAGACTAAAAGTTGTTTACAAAAAT-ACAGATTATTTTGACCAAATAATGC
193 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC-AAAATGACAGATTATTTGGACCAAATGATGC
* * * * *
20983 GATTTCCCGAGAAT-GAATGTTCGAAAAATTACTTGAAGGAATGGATTGTCTTGATTATTTTAAG
257 GATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
*** * * * ** *
21047 GAATTGAAGTTGTAAAAGAACTC-AAAAAATTATGGAAATTTTAGAAGTTCGACCAAGAACCAAG
322 GAACCAAAGTTATAAAAGAACTCGAAAAAGTT-T-GAAAGTTCGGAAGTTCGGCCAAGAACCAAG
* * * * * * *
21111 AGAGAAACAAATCTCAAATAATTAAGTTTTTAATCCAAAGATCAA
385 AGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * ** * * * *
21156 AAGTTGTTTACAAAATGATAGATTATTTGGACTGAATGATGCAATTTCCCGAGAATAGAATTTTT
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* *
21221 GAAAAATTG-TTCGAAGAAAT-GAATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAATAAC
66 G-AAAATTGCTT-GAAGGAATCG-ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
* * * * ** *
21284 TCGAAAAACTTTGAAAAGTTTGGAAGTTCGGCCAAGAACCAAGAAAGAAACAATTAGCACGTAAA
128 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAA
* * * * * * * *
21349 TAAGTTTTTAATTCAAAGATCGAAAGTTTTTTTACAAAAGGACAAACTATTTTGACCAAATGGTG
192 TAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
* * * ** * * * * *
21414 CAATTACTCGAGGTTGGAATGTTTGGAAAATTGCTCGAAGGAATCGATCATCTTGAATATTTTAA
256 CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * **
21479 GGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGACAAGTTTGAAAGTTCAACCAAGAACCAAG
321 GGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAAG
* * * * *
21544 AGAGAAAAAATTCTCACATAAATAAGTTTTTAATCCAAACACCAA
385 AGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * * * *
21589 AAATTCTTTACAAAATGACTGATTATTTGGACCAAAGGATGTGATTTCCCGAGAATGAAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT-
* * * * * *
21654 AAAAAATTGCTCGAAGGAATGGATCTTCTTGAATACTATT-AGGAACCGAAGTTATAAAGGAACG
65 AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACT
* * * * *
21718 CGAAAAAGCTTGAAAAGTTCGGAAGTTCGGCCAAGAACCAAAAGAGAAACCATTCTTACGTAAAT
129 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAAT
* * * * * *
21783 AAGTTTTTAATTCAAAGACCAAAAATTTTTTACAAAAGGAAAAACTATTTGGACCAAATGATGCG
193 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCG
* * * * * * ** * **
21848 ATTTCTCGAGCATGGAATGTTCGACAAATTACTCAAAGGATTCAATCCTCTTGAACGCTTTAAGG
258 ATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
** * * *
21913 AACTGAAGTT-TAAAAAGAACTCGAAAAAGTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
323 AACCAAAGTTAT-AAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAAGA
* * * * * * *
21977 AAGAAACAATTCTCACATAAATAAGTTTTTAGTCCAAAAACTAA
386 GAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * * *
22021 AAGTTGTTTACAAAATGAAAGATTATTTGGACCAAATGATACGATATCCCGAGAATTGAATGTTT
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* *
22086 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
66 G-AAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * * * *
22151 AAAAAATTTTGAAAATTTCGGAAGTTCGGCCAATAACCAAGAGAGAAAGATTTCTTATATAAATA
130 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACA-TTCTCACATAAATA
* * *
22216 AGTTTTTAATCCAAATACCAAAAGTTGTTTACAAAATGACAGATTATTTGGATCAAATGATGCGA
194 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGA
* * * * * * *
22281 TTTCCCGAGAATGAAATGTTTGAGAAATTGTTC-AAAGAA--GATCATCTT-AGATGCTTTAAGG
259 TTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA-ATACTTTAAGG
** *
22342 AA-CAGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAAGTTCGGAAGTTTAGCCAAGAACCAAAA
323 AACCA-AAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAAGA
* * * * * *
22406 CATAAATAATTCTCAC-GTAAATAAGTTTTTAATTAAAAGACTAA
386 GAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * * * * * * **
22450 AAGTTTTTTACAAAAGGGCAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATTAAATGTTT
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-TT
* * * * * * * *
22515 GGATAATTGCTCGAAGGAATCGATTGTCATAAATACTTTAA-GAACCGAAGTTATAAGAGAACCC
65 AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * *
22579 AAAAAATTTTGACAAGTTCAGAAGTTCAGCCAAGAAGC-A-AGAGAAACAATTCTCACATAAATA
130 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAATA
* * * * * *
22642 AATTTTTAATCCAAAGACCAAGAGTTGTTTACAAAATGATAGATTATTTGGACCAAATCATGTGA
194 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGA
* * * *
22707 TTTCCCGAGAATGGAATGTTTGAAAATTTGTTCGAAGAAATGGATCGTCTTGAATACTTTAAGGA
259 TTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* *
22772 ACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAATAGTTCAGAAGTTCGGCCTAGAACCAAGAGA
324 ACCAAAGTTATAAAAGAACTCGAAAAAGTTTGAA-AGTTCGGAAGTTCGGCCAAGAACCAAGAGA
** * *
22837 GAAATC-ATTCTCGA-TTAAATAAGTTTTTAATTCAAAGACCGA
388 GAAA-CAATTCTC-ACAGAAATAAATTTTTAATTCAAAGACCAA
* * *
22879 AAGTTTTTTACAAAAGGACTA-ACTATTTGGACCAAATGATGCGATTT-TCGAAGAATGGAATGT
1 AAGTTGTTTACAAAATGAC-AGACTATTTGGACCAAATGATGCGATTTCCCG-AGAATGGAATGT
* * * * **
22942 TCGAAAAATTTCTCGAAAGAATCGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAAC
64 TAG-AAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
** * *
23007 TTTAAAAAGATTGACAAGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAACTATTCTCACATAAA
128 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATTCTCACATAAA
* * * * * * * * * * **
23072 TAAGATTTTAATTGAAAAACCGAAAGTTGATTACAAAAGGATAAAATATTTGAACCAAATGACCC
192 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGC
* * * * * *
23137 GATTTCCTGAGCATGGAATGTTTGGAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAG
257 GATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * * * * *
23202 GAACCGAAGTTATAAAATAACTCGTAAAAGTTTGACATGTTCGAAAGTTCAGTCAAGAACCAAGG
322 GAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAGTTCGGAAGTTCGGCCAAGAACCAAGA
* * * * * *
23267 GAGAAGCCATTCGCAC-GTAAAT-AGTTTTTAATTCTAAGGCCAA
386 GAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
* * * * * *
23310 AAGTTGTTTACAAAATGAAAAACTATTTCGACCAATTGATGCGATTTCTCGAGCAT---A-G---
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
* * * * * * *
23368 G--AATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAAGGAATCGAAGCTATAATAGAACACG
66 GAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * * *
23431 AAAAAGTTTGAAAAGTTTGGAAGTTCGACCAAGAACCAAGAGAGAAAAATTCT-A-ATGCTAATA
131 AAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACATTCTCACAT--AAATA
* * * * * *
23494 AGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATGACAAACTT-CTTGGTCGAAATAATGCG
194 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGA-TTATTTGGACCAAATGATGCG
* * * * * * * * * *
23558 GTTTCTCGAGCATGGAATGCTTAG-AAAATTACTCGAAAGAATTGATCGTCTT---TAATTCAAA
258 ATTTCCCGAGAATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * *
23619 G-ACCAAAGTTATAAAAGAACTTGTAAAAGTTTGACATA-TTCAGATGTTCGGCAAAGAACC-A-
322 GAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGA-A-AGTTCGGAAGTTCGGCCAAGAACCAAG
* * **
23680 AGAGAAACAATTCTCAC-GTAAATAAGTCTCCAATTCAAAGACCAA
385 AGAGAAACAATTCTCACAG-AAATAAATTTTTAATTCAAAGACCAA
** * * * * ** *
23725 AAGTTGTTTATGAACTAACAAACTATTTGGACCAAATAATGCGATTTCTAGAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT-
* * * * *
23790 GGAAAATTG-TTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA-AAATGAATT
65 AGAAAATTGCTT-GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
*** * * * * **
23853 CGTAAAAA-TTTGACAAGTTTAAAAGTTCAGCTAAGAACCCAGCA-AGAAATAATTCTCATGTAA
129 CG-AAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAG-AGAGAAA-CATTCTCACATAA
* * * *
23916 ATAAGTTTTTAATCCAAAGAACAAAAGTTGTTTACAAAATAACAGATTATTTCGACCAAATGATG
191 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
* * ** *
23981 CAATTTCCTGAGAATCAAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
256 CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * * *
24046 GGAACCGAAGTTATAAAAGAATTCGAAATAGTTTGAAAAGTTTGGAAGTTCGGCCAAGAGCCAA-
321 GGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCCAAGAACCAAG
* * *
24110 ATGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCGAA
385 A-GAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACC-AA
* * * * ** *
24157 TA-TAT-TTTACAAAA-GAACAAACTATTTTGACCAAATGGTGCGATTTCCCGAGGCTAGAATGT
1 AAGT-TGTTTACAAAATG-ACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-
* * * *
24219 TTGGAAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGCAACCAAAGTTATAAAAGAAC
63 TTAGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
** * * * *
24284 TAAAAAAAGTTTGACTAA-TTTGGAAGTTTGGCAAAGAACCAAGAGAGAAACCATTCTCACGTAA
128 TCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAA
*
24348 ATAAGTTTTTAA-TCGAAAGACCAAAAGTTGTTTACAAAATAACA-AGTTATTTGGACCAAATGA
191 ATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAGA-TTATTTGGACCAAATGA
* * * * * * * *
24411 TGTGATTTCCCAAGAATGGAATATTCAAAAAATTGTTTC-AAGAAATGGATAGCCTTGAATACTT
254 TGCGATTTCCCGAGAATGGAATGTTCGAAAAATTG-CTCGAAGGAATGGATCGTCTTGAATACTT
* * * * * *
24475 TAAAGAACCGATGTTATAAAAGAACTCTAAAAAGTTTGAAAAGTTCGAAAGTTCGACCGAA-AAC
318 TAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTCGGCC-AAGAAC
* * * * * *
24539 CAAGAGAGAAACAATTCTCATATAAATCAGTTTTTAATTCAAAGATCGA
381 CAAGAGAGAAACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
* * * * * * ** *
24588 AAGTTTTTTACAAAAGGACAAACTATTTGGACCAAATGGTACGATTTCTCGAGGCTAGAATGTTT
1 AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-TT
* * * *
24653 GGAAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGCAACCAAAGTTATAAAAGAACTC
65 AGAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * *
24718 GAAAAAGTTTGACAAGTTCGAAAGTTCAGTCAAGAACCAAGGGAGAAACCATTCTCACGTAAATA
130 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CATTCTCACATAAATA
* * * *
24783 AGTTTTTAATTCTAAA-ACCAAAAGTTTTTTTCAAAATGACAAACTATTTGGACCAAATGATGCG
194 AGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCG
* ** * * *
24847 ATTTCCTGAGCTTGGAATGTTCGAAAAATTTCTCGAAGGAATGGATCTTCTTGAATACTGTAAGG
258 ATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * *
24912 AA-TAGAAGCTATAATAGAACTGGAAAAAGTTTGAAAAGTTTGGAAGTTC
323 AACCA-AAGTTATAAAAGAACTCGAAAAAGTTTG-AAAGTTCGGAAGTTC
24961 AACTAGGAAC
Statistics
Matches: 15381, Mismatches: 2661, Indels: 1633
0.78 0.14 0.08
Matches are distributed among these distances:
408 64 0.00
409 240 0.02
410 1166 0.08
411 226 0.01
412 11 0.00
413 9 0.00
414 25 0.00
415 64 0.00
416 51 0.00
417 20 0.00
418 86 0.01
419 234 0.02
420 369 0.02
421 115 0.01
422 194 0.01
423 585 0.04
424 60 0.00
425 440 0.03
426 962 0.06
427 490 0.03
428 476 0.03
429 1611 0.10
430 1751 0.11
431 1984 0.13
432 2471 0.16
433 599 0.04
434 154 0.01
435 177 0.01
436 5 0.00
440 9 0.00
441 5 0.00
442 2 0.00
445 2 0.00
447 5 0.00
448 6 0.00
449 1 0.00
450 3 0.00
451 6 0.00
452 5 0.00
453 6 0.00
454 3 0.00
455 10 0.00
456 11 0.00
457 3 0.00
458 6 0.00
459 6 0.00
460 6 0.00
463 10 0.00
464 16 0.00
465 22 0.00
466 19 0.00
467 11 0.00
468 11 0.00
469 11 0.00
470 19 0.00
471 14 0.00
472 8 0.00
473 1 0.00
474 7 0.00
475 30 0.00
476 14 0.00
477 20 0.00
478 8 0.00
479 20 0.00
480 18 0.00
481 23 0.00
482 17 0.00
483 17 0.00
484 36 0.00
485 35 0.00
486 24 0.00
487 39 0.00
488 27 0.00
489 26 0.00
490 13 0.00
491 21 0.00
492 11 0.00
493 12 0.00
494 25 0.00
495 7 0.00
496 8 0.00
497 2 0.00
498 4 0.00
500 4 0.00
501 7 0.00
502 9 0.00
503 7 0.00
504 1 0.00
505 5 0.00
506 1 0.00
507 4 0.00
510 2 0.00
511 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (429 bp):
AAGTTGTTTACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTA
GAAAATTGCTTGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
AAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACATTCTCACATAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATT
TCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
CAAAGTTATAAAAGAACTCGAAAAAGTTTGAAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAA
ACAATTCTCACAGAAATAAATTTTTAATTCAAAGACCAA
Found at i:16657 original size:216 final size:216
Alignment explanation
Indices: 16246--24960 Score: 7405
Period size: 216 Copynumber: 40.7 Consensus size: 216
16236 TCACATAAAT
* * * * *
16246 AAGTTTTTTACAAAAGGACTA-ACTATTTGGACCAAGTGATGCGATTTCCCGAGAATGGAATGCT
1 AAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * * * *
16310 C-AGAGAATTGTACGAAGGAATCGATCGTCTTGAATAGTCTAAGGAACCGAAGCTATAAGAGAAC
65 CGA-AAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * * ***
16374 TTGAAACAGTTTGACTAGTTCAGAAGTTCGGCCAAGAACCAAGACAGAAATGTTTCTCACATAAA
129 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAA
16439 TAAATTTTTAATCCAAAGACCAA
194 TAAATTTTTAATCCAAAGACCAA
* * * *** * *
16462 AAGTTGTTTACAAAATAACAGATTATTTAGACCTAATGATGCGATTTCTTAAGTACGGAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * *
16527 GAAAAATTGTTGGAAGAAATTGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * * * *
16592 GAAAAAGTTTG-CAAAGTTTGGCAGTTCAGCCTAGAACCAAGAGTGAAACAATTCTTACGTAAAT
131 GAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
* * **
16656 AAGTTTTTAATTCAAAGACTGA
195 AAATTTTTAATCCAAAGACCAA
* * * * * *
16678 AAGTTTTTTACAGAAGGACCAG-TTATTTGGACC-AATGATGCGATTTCCCAAAAATGAAATGTT
1 AAGTTGTTTACAAAATGA-CAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * * * * *
16741 C-AAAAATT-TGCGTGAAGGCATCAATCGTCTTGAATACTTTATGGAATCGAAGTTATAAACGTA
65 CGAAAAATTGTTC--GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * *
16804 CTCAAAAAAGTTTGACAAGTTCTGAAGTTCTGTCAAGAACC-A-AGAGAAACAATTCTCACATAA
128 CTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAA
*
16867 ATAAATTTTTAATCC-AGGAACCAA
193 ATAAATTTTTAATCCAAAG-ACCAA
*
16891 AAGTTGTTTACAAAATGACAGATTATTTGGATCAAATGATGCGATTTCCCGAGAATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * *
16956 GAAAAATTATTCGACGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGACCTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * * * *
17021 GAAAAAGTTT-TCAAAGTTTGGAAGTTCGGCCTAA-AACCAAGAGTGAAATAATTATCACGTAAC
131 GAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCC-AAGAACCAAGAGAGAAACAATTCTCACATAAA
* *
17084 TAAGTTTTTAATTCAAAGACCAA
194 TAAATTTTTAATCCAAAGACCAA
* * * * ** *
17107 AAGTTCTTTACAAAAGGGCTA-ATTATTTGGACCAAATGATGAGATTTCTAGAAAATGGAATGTT
1 AAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * *
17171 TGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGTACT
65 CGAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
17236 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACC-A-AGAGAAACAATTCTCACATAAAT
130 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
17299 AAATTTTTAATCCAAAGACCAA
195 AAATTTTTAATCCAAAGACCAA
* * * * *
17321 AAGTTGTTTACAAAATAACAGATTATTTGGACCAAATGATGCAATTTCTCGAGAACGAAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * *
17386 GAAAAATTGTTCGAAGAAATGGATCATCTTGAATACTTTAAGGAGCAAAAGTTATAAAAGAACTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * * *
17451 GAAAAAGTTT-ACAAAG-T---AAGTTCGGCCCAGAACCACGAGTGAAATAATTCTTACGTAAAT
131 GAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
* * *
17511 AAGTTTTTAATTCAAAGACCGA
195 AAATTTTTAATCCAAAGACCAA
* * * * *
17533 AAGTTTTTTACAAAAGGACTA-ATTATTTGGACCAAATGATGTGATTTCTCGAGAATGAAATGTT
1 AAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * *
17597 CGGAAAATTGATCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGATATAAAAGTACT
65 CGAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
* * * * *
17662 TGACAAAGTTTGAAAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAAC-ATGTCTCACA-GAA
130 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAAT-TCTCACATAAA
* * *
17725 TAAAATTTTAATCCCAATACCAA
194 TAAATTTTTAATCCAAAGACCAA
* * * * *
17748 AAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGTGATTTACCGAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * * * *
17813 -AGATACTTGCTCGAAGGAATCGATAGTCATGAATACTTTAAGGAACCGAAGTTATAAAATAACT
66 GA-AAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
* * * *
17877 CGAAAAAGTTTGACAAGTTCAGAAGTTCGGTCAAGAAACAAGAGAGAAACAATTCTCACAAAAAT
130 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
17942 AAATTTTTAATCCAAAGACCAA
195 AAATTTTTAATCCAAAGACCAA
* **
17964 AAGTTG---------TGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGGACAGAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * *
18020 GAAAAATTGCTCAAAGAAATGGATCTTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * *
18085 GAAAAAGTTTGACAAGTTCGGAAGTTTGGCCTAGAACTAAGAGAGAAATAATTCTCACGTAAATA
131 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
** **
18150 GGTTTTTAATTGAAAGACCAA
196 AATTTTTAATCCAAAGACCAA
* * * *
18171 AAGTTTTTTACAAAATGATTA-ACTATTTGGACCAAATGATGCGATTTCCCGAGAATAGAATGTT
1 AAGTTGTTTACAAAATGA-CAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * *
18235 TGGAAAA-T-TTCATGAAGGAATTGATCATTTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
65 CGAAAAATTGTTC--GAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * *
18298 CTCGAAAAAGTTTGACAAGTTCAGATGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCATATAA
128 CTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAA
* * *
18363 ATAAAATTTTAATTCAAAGACAAA
193 ATAAATTTTTAATCCAAAGACCAA
* ** ***
18387 AAGTTGTTTACAAAATGACTG-TCTATTTGGACCAAATGATGCGATTTCTTGAGAAAAAAATGTT
1 AAGTTGTTTACAAAATGACAGAT-TATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * *
18451 CGAAAAATTGTTTGAAGAAAT-GTATCGTCTTGAATACTTTAAGGAGCCAAAGTTATAAAAGAAT
65 CGAAAAATTGTTCGAAGGAATCG-ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * * * * * * *
18515 TCGAAAAAGTGTGTA-AAGCTAGAAAGTTTGGCCTAGATCCAAGAGGGAAATAATTCTCACGTAA
129 TCGAAAAAGTTTG-ACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAA
* * * *
18579 ATAAGTTTTTTA-CAAAAGGACTAA
193 ATAAATTTTTAATCCAAA-GACCAA
* * * * * * * *
18603 CTA-TT-TTGACCAAATGA-TG-TGATTT--CCCGAGAATG--G-AATGTT-CCGA-AA---ATT
1 -AAGTTGTTTACAAAATGACAGATTATTTGGACC-A-AATGATGCGAT-TTCCCGAGAATGGAAT
* * * * *** * ** ** ** *
18654 GCTCAAAAGAATCGATCGTCTTGAAT--A-C-T-TT-AAGGAAC-CGAAGTTATAAAAG-AACTC
62 GTTCGAAA-AATTGTTCG-AAGGAATCGATCGTCTTGAA--TACTTTAAGGAACCAAAGTTA-T-
* * ** * * * *
18711 GAAA-AAGTTTAACAAG-TTCAGAAGTTCNGCCAA-----G---A--ACCAAGAGAGAAACAATT
121 AAAAGAACTCGAAAAAGTTTGACAAGTTC-G-GAAGTTCGGCCAAGAACCAAGAGAGAAACAATT
*
18764 CTCATATAAATAAATTTTTAATCCAAAGACCAA
184 CTCACATAAATAAATTTTTAATCCAAAGACCAA
* * * * * * * *
18797 AAGTTGTTTATAAAATGACAGATTCTTTGGATCAAATGATGCGATTTCTCGAGAACGAAATATTT
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * *
18862 GAAAAAAAT-TTCGAAGAAATGGATCGTATTGAATACTTTAAGGAACCAAAGTTATAAAAGGACT
66 G-AAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
* * * * ** * * * ** **
18926 CGAAAATGTTTGAAAAGTTTGAAAGTTTAGCCTAGAACCAAAAGATAATTAATTCTCATGTAAAT
130 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
* *
18991 AATAAGTTTTTAATTCAAAGACCGA
195 -A-AA-TTTTTAATCCAAAGACCAA
* * ** * *
19016 AAGTTTTTTAC-AAAGGAACTA-ACCATTTGGACCAAATGATGCAATTTCTCGAGAATGGAATGT
1 AAGTTGTTTACAAAATG-AC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGT
* * * * * * * *
19079 TTGGAAAATTGCTAGAAGGAATCGATCATCCTAAATACTTTAAGGAACCGAAGTTATAAAAGAAC
64 TCGAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
*
19144 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACTAAGAGAGAAACAATTCTCACATAAA
129 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAA
* * * *
19209 TAAGTTTTTAATTCAAACACC-G
194 TAAATTTTTAATCCAAAGACCAA
* * * * * * * * * *
19231 AAGTTATTTACAAAAGGATAAAATATTTGGGA-AAAATTATGC-ACTCTCTCGAGCATGGAATGT
1 AAGTTGTTTACAAAATGACAGATTATTT-GGACCAAATGATGCGA-TTTCCCGAGAATGGAATGT
* * * * * * ** *
19294 TTGGAAAATTGCTCGAAAGAATGGATTGTCTTGAATACTTTAAGGAACTGAAGTTATAAAATAAC
64 TCGAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * **** * * **
19359 TTGTAAAAGTTTGGCAAGTTCGAAAGTTCAATAAAGAACCAAGAGAGAAACCATTCTTATGTAAA
129 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAA
* * *
19424 TAAGTTTTTAATTCTAAGACCAA
194 TAAATTTTTAATCCAAAGACCAA
* * * * *
19447 AAGTTGTTTACAAAATGACAAACTATTTGCACCAAATGATGCGATTT-CC-TG-A--GCA---T-
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * *** * *
19503 G--AAA-TGTTCGAAGGAATGGATCGTCTTGAATACTGTAAGGAAATGAAGCTATAATAGAACTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * *
19565 GAAAAAGTTTGGA-AGGCTT-GGAAGTTCGACCAACAACCAAGAGAGAAACCATTCTCACTTAAA
131 GAAAAAGTTT-GACAAG-TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAA
* * * **
19628 TAAGTTTTTAATTCAAAAAGTAA
194 TAAATTTTTAATCCAAAGACCAA
* * * * * * * * *
19651 TAGTTGTTTACAAAAAGACAAACTACTTGGTCAAAATGATGCAATTTCTCGAGAATGGAATGCTT
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-TT
* * * *
19716 -GGAAAATGGATT-GAAGGAATAGATTGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
65 CGAAAAATTG-TTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * * * * * *
19779 T-TATAAAAGTTTGACATGTTC-AAATGTTC-GACATGAACCAGGAGAGAGACAATTTTCACGTA
129 TCGA-AAAAGTTTGACAAGTTCGGAA-GTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATA
* * *
19841 AATAAGTCTTTAATTCAAAGACCAA
192 AATAAATTTTTAATCCAAAGACCAA
* * * * * * * *
19866 AAGTTGTTTACGAAATGACAAACTATTCGGACCTAATGATGCGATTTCTCAAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * * * *
19931 GGAAAATTGCTAGAAGGAATGGATTGCCTTGAACACTTTAAGGAACCAAAGTTA-AAAAGAACT-
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * * * * *
19994 AATAAAATTTTGACAAATTTGGAAGTTCGACTAAGAACCAAGAGAGAAATAATTCTCACGTAAAT
131 GA-AAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
* *
20059 AAGTTTTTAATCCAAAGTCCAA
195 AAATTTTTAATCCAAAGACCAA
* * * * * *
20081 AAGTTGTTTACAAAATAACAGATTATTTAGACCAAATTATGCAATTTCCCAAGAATCGAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
** * * * * *
20146 GAAAAATTACTCCACGAAATAGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAAAACTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * *
20211 GAAAAAGATTGAAAAGTTTGGAAGTTCAGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT-
131 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* **
20275 AATTTTT-GT--AAAGACTGA
196 AATTTTTAATCCAAAGACCAA
* * * * * * * ** ** * *
20293 AAGTTTTTTTACAAAAGGACAAACTATTTTGGACCAAATGGTGCTATTTTTCTAAGGTTCGAATT
1 AAG-TTGTTTACAAAATGACAGATTA-TTTGGACCAAATGATGCGA-TTTCCCGAGAATGGAATG
* * * * *
20358 TTTGGAAAATTGCTCGAAGGAATCGATCGTCTTGAATATTTTAACGAACCGAAA-TTATAAAAGA
63 TTCGAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACC-AAAGTTATAAAAGA
* * * *
20422 ACTTGAGAAAGTTTGACAAGCTCGAAAGTTCGGCCAAGAACCAA-A-AGAAACAATTCTCACATA
127 ACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATA
*
20485 AATAAGTTTTTAATCCAAAGACCAA
192 AATAAATTTTTAATCCAAAGACCAA
* * * * *
20510 AAGTTCTTTACAAAATGACAGATTATTTGTACCAAATGATGCGATTT-TCGAGAGTGGAATGTTT
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * * *
20574 AAAAAATT-TCTCGAAGGAATGGATTGCCTTGAATACTTTAAGGAAACGAAA-TTATAAATGAAC
66 GAAAAATTGT-TCGAAGGAATCGATCGTCTTGAATACTTTAAGG-AACCAAAGTTATAAAAGAAC
* * * **
20637 TCGAAAAAGTTGGAAAAGTTTGGAAGTTCGGCCAAGAACCAAGAGAGAAACCAA-TCTCATGTAA
129 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CAATTCTCACATAA
* * *
20701 ATAAGTTTTTAATTCAAAGACCGA
193 ATAAATTTTTAATCCAAAGACCAA
* * * * ** * *
20725 AAGTTTTTTACAAAAAGACAAACTATTTGGACCAAATGATGCGATTTTTCAAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* ** * * * *
20790 -AGAAAATTACTT-GAAGGAATCGATTATGTTGAAAACTTTAAGGAATCAAAGTTTTAAAAGAAC
66 GA-AAAATT-GTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * * *
20853 TCAAAAAATTTTG-CAAAGTTCAGAAGTTTGTCCAAGAACCAGGAGAGAAACAATTCTCACATAA
129 TCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAA
** * *
20917 ATAGGTCTTTAATCCAAAGACTAA
193 ATAAATTTTTAATCCAAAGACCAA
* *
20941 AAGTTGTTTACAAAAAT-ACAGATTATTTTGACCAAATAATGCGATTTCCCGAGAAT-GAATGTT
1 AAGTTGTTTAC-AAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * * *** *
21004 CGAAAAATTACTT-GAAGGAATGGATTGTCTTGATTATTTTAAGGAATTGAAGTTGTAAAAGAAC
65 CGAAAAATT-GTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * ** * * *
21068 TC-AAAAAATTATGGA-AATTTTAGAAGTTCGACCAAGAACCAAGAGAGAAACAAATCTCAAATA
129 TCGAAAAAGTT-T-GACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATA
* * *
21131 ATTAAGTTTTTAATCCAAAGATCAA
192 AATAAATTTTTAATCCAAAGACCAA
* ** * * * *
21156 AAGTTGTTTACAAAATGATAGATTATTTGGACTGAATGATGCAATTTCCCGAGAATAGAATTTTT
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * *
21221 GAAAAATTGTTCGAAGAAAT-GAATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACT
66 GAAAAATTGTTCGAAGGAATCG-ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
* * * * ** *
21285 CGAAAAACTTTGAAAAGTTTGGAAGTTCGGCCAAGAACCAAGAAAGAAACAATTAGCACGTAAAT
130 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
* * * *
21350 AAGTTTTTAATTCAAAGATCGA
195 AAATTTTTAATCCAAAGACCAA
* * * * * * * * * **
21372 AAGTTTTTTTACAAAAGGACAAACTATTTTGACCAAATGGTGCAATTACTCGAGGTTGGAATGTT
1 AAG-TTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * * *
21437 TGGAAAATTGCTCGAAGGAATCGATCATCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACT
65 CGAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
* * ** *
21502 CGAAAAAGTTTGACAAGTTTGAAAGTTCAACCAAGAACCAAGAGAGAAAAAATTCTCACATAAAT
130 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
* *
21567 AAGTTTTTAATCCAAACACCAA
195 AAATTTTTAATCCAAAGACCAA
* * * * * *
21589 AAATTCTTTACAAAATGACTGATTATTTGGACCAAAGGATGTGATTTCCCGAGAATGAAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * * * *
21654 AAAAAATTGCTCGAAGGAATGGATCTTCTTGAATACTATT-AGGAACCGAAGTTATAAAGGAACG
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACT
* * * * * *
21718 CGAAAAAGCTTGAAAAGTTCGGAAGTTCGGCCAAGAACCAAAAGAGAAACCATTCTTACGTAAAT
130 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
* *
21783 AAGTTTTTAATTCAAAGACCAA
195 AAATTTTTAATCCAAAGACCAA
* * * * * * * *
21805 AAATTTTTTACAAAAGGAAAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* ** * * * * ** **
21870 GACAAATTACTCAAAGGATTCAATCCTCTTGAACGCTTTAAGGAACTGAAGTT-TAAAAAGAACT
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAAGAACT
* * * *
21934 CGAAAAAGTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCACATAAAT
130 CGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
* * * *
21999 AAGTTTTTAGTCCAAAAACTAA
195 AAATTTTTAATCCAAAGACCAA
* * * * *
22021 AAGTTGTTTACAAAATGAAAGATTATTTGGACCAAATGATACGATATCCCGAGAATTGAATGTTT
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * *
22086 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * * * * * *
22151 AAAAAATTTTGAAAATTTCGGAAGTTCGGCCAATAACCAAGAGAGAAAGATTTCTTATATAAATA
131 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* *
22216 AGTTTTTAATCCAAATACCAA
196 AATTTTTAATCCAAAGACCAA
* * *
22237 AAGTTGTTTACAAAATGACAGATTATTTGGATCAAATGATGCGATTTCCCGAGAATGAAATGTTT
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * *
22302 GAGAAATTGTTC-AAAGAA--GATCATCTT-AGATGCTTTAAGGAA-CAGAAGTTATAAAAGAAC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGA-ATACTTTAAGGAACCA-AAGTTATAAAAGAAC
* ** * * * * *
22362 TCGAAAAAGTTTGAAAAGTTCGGAAGTTTAGCCAAGAACCAAAACATAAATAATTCTCACGTAAA
129 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAA
* ** *
22427 TAAGTTTTTAATTAAAAGACTAA
194 TAAATTTTTAATCCAAAGACCAA
* * * * * * * * ** *
22450 AAGTTTTTTACAAAAGGGCAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATTAAATGTTT
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * * * * * *
22515 GGATAATTGCTCGAAGGAATCGATTGTCATAAATACTTTAA-GAACCGAAGTTATAAGAGAACCC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * *
22579 AAAAAATTTTGACAAGTTCAGAAGTTCAGCCAAGAAGC-A-AGAGAAACAATTCTCACATAAATA
131 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
22642 AATTTTTAATCCAAAGACCAA
196 AATTTTTAATCCAAAGACCAA
* * * * *
22663 GAGTTGTTTACAAAATGATAGATTATTTGGACCAAATCATGTGATTTCCCGAGAATGGAATGTTT
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * *
22728 GAAAATTTGTTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * *
22793 GAAAAAGTTTGA-ATAGTTCAGAAGTTCGGCCTAGAACCAAGAGAGAAATC-ATTCTCGA-TTAA
131 GAAAAAGTTTGACA-AGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CAATTCTC-ACATAA
* * *
22855 ATAAGTTTTTAATTCAAAGACCGA
193 ATAAATTTTTAATCCAAAGACCAA
* * * *
22879 AAGTTTTTTACAAAAGGACTA-ACTATTTGGACCAAATGATGCGATTT-TCGAAGAATGGAATGT
1 AAGTTGTTTACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCG-AGAATGGAATGT
* ***
22942 TCGAAAAATT-TCTCGAAAGAATCGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAA
64 TCGAAAAATTGT-TCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
** * * *
23006 CTTTAAAAAGATTGACAAGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAACTATTCTCACATAA
128 CTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAA
** * *
23071 ATAAGA-TTTTAATTGAAAAACCGA
193 ATAA-ATTTTTAATCCAAAGACCAA
* * * * * * ** * * *
23095 AAGTTGATTACAAAAGGATAAAATATTTGAACCAAATGACCCGATTTCCTGAGCATGGAATGTTT
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * * * *
23160 GGAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * * * * * * *
23225 GTAAAAGTTTGACATGTTCGAAAGTTCAGTCAAGAACCAAGGGAGAAGCCATTCGCACGTAAAT-
131 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* * * *
23289 AGTTTTTAATTCTAAGGCCAA
196 AATTTTTAATCCAAAGACCAA
* * * * * * *
23310 AAGTTGTTTACAAAATGAAAAACTATTTCGACCAATTGATGCGATTTCTCGAGCAT---A-G---
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * * * * *
23368 G---AATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAAGGAATCGAAGCTATAATAGAACAC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * *
23430 GAAAAAGTTTGAAAAGTTTGGAAGTTCGACCAAGAACCAAGAGAGAAA-AATTCT-A-ATGCTAA
131 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACAT--AAA
* * *
23492 TAAGTTTTTAATTCAAAGAGCAA
194 TAAATTTTTAATCCAAAGACCAA
* * * * * * * *
23515 AAGTTGTTTACAAAATGACAAACTT-CTTGGTCGAAATAATGCGGTTTCTCGAGCATGGAATGCT
1 AAGTTGTTTACAAAATGACAGA-TTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATG-T
* ** * * * * *
23579 TAG-AAAATTACTCGAAAGAATTGATCGTCTT---TAATTCAAAG-ACCAAAGTTATAAAAGAAC
64 TCGAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * * *
23639 TTGTAAAAGTTTGACATA-TTCAGATGTTCGGCAAAGAACC-A-AGAGAAACAATTCTCACGTAA
129 TCGAAAAAGTTTGACA-AGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAA
* * ** *
23701 ATAAGTCTCCAATTCAAAGACCAA
193 ATAAATTTTTAATCCAAAGACCAA
** * * * * * ** *
23725 AAGTTGTTTATGAACTAACAAACTATTTGGACCAAATAATGCGATTTCTAGAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * *
23790 GGAAAATTGTTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTA-AAATGAATT
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACT
*** * * * * **
23853 CGTAAAAA-TTTGACAAGTTTAAAAGTTCAGCTAAGAACCCAGCA-AGAAATAATTCTCATGTAA
130 CG-AAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAG-AGAGAAACAATTCTCACATAA
* *
23916 ATAAGTTTTTAATCCAAAGAACAA
193 ATAAATTTTTAATCCAAAGACCAA
* * * * **
23940 AAGTTGTTTACAAAATAACAGATTATTTCGACCAAATGATGCAATTTCCTGAGAATCAAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * *
24005 AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAATTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * *
24070 GAAATAGTTTGAAAAGTTTGGAAGTTCGGCCAAGAGCCAA-ATGAGAAACAATTCTCACATAAAT
131 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGA-GAGAAACAATTCTCACATAAAT
* **
24134 AAGTTTTTAATTTAAAGACCGAA
195 AAATTTTTAATCCAAAGACC-AA
* * * * * ** *
24157 TA-TAT-TTTACAAAA-GAACAAACTATTTTGACCAAATGGTGCGATTTCCCGAGGCTAGAATGT
1 AAGT-TGTTTACAAAATG-ACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGT
* * * *
24219 TTGGAAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGCAACCAAAGTTATAAAAGAAC
64 TCGAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
** * * * * *
24284 TAAAAAAAGTTTGACTAA-TTTGGAAGTTTGGCAAAGAACCAAGAGAGAAACCATTCTCACGTAA
129 TCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAA
* *
24348 ATAAGTTTTTAATCGAAAGACCAA
193 ATAAATTTTTAATCCAAAGACCAA
* * * *
24372 AAGTTGTTTACAAAATAACA-AGTTATTTGGACCAAATGATGTGATTTCCCAAGAATGGAATATT
1 AAGTTGTTTACAAAATGACAGA-TTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * * * * *
24436 CAAAAAATTGTTTC-AAGAAATGGATAGCCTTGAATACTTTAAAGAACCGATGTTATAAAAGAAC
65 CGAAAAATTG-TTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * *
24500 TCTAAAAAGTTTGAAAAGTTCGAAAGTTCGACCGAA-AACCAAGAGAGAAACAATTCTCATATAA
129 TCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCC-AAGAACCAAGAGAGAAACAATTCTCACATAA
* * * * *
24564 ATCAGTTTTTAATTCAAAGATCGA
193 ATAAATTTTTAATCCAAAGACCAA
* * * * * * * ** * *
24588 AAGTTTTTTACAAAAGGACAAACTATTTGGACCAAATGGTACGATTTCTCGAGGCTAGAATGTTT
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * *
24653 GGAAAATTGCTCGAAGGAATCGATCGTCTTGAATACTTTAAGCAACCAAAGTTATAAAAGAACTC
66 GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * * *
24718 GAAAAAGTTTGACAAGTTCGAAAGTTCAGTCAAGAACCAAGGGAGAAACCATTCTCACGTAAATA
131 GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* *
24783 AGTTTTTAATTCTAAA-ACCAA
196 AATTTTTAA-TCCAAAGACCAA
* * * * * **
24804 AAGTTTTTTTCAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCTGAGCTTGGAATGTTC
1 AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
* * * * * *
24869 GAAAAATT-TCTCGAAGGAATGGATCTTCTTGAATACTGTAAGGAA-TAGAAGCTATAATAGAAC
66 GAAAAATTGT-TCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAAC
* * *
24932 TGGAAAAAGTTTGAAAAGTTTGGAAGTTC
129 TCGAAAAAGTTTGACAAGTTCGGAAGTTC
24961 AACTAGGAAC
Statistics
Matches: 6869, Mismatches: 1374, Indels: 512
0.78 0.16 0.06
Matches are distributed among these distances:
193 1 0.00
194 39 0.01
195 13 0.00
196 2 0.00
197 8 0.00
198 1 0.00
199 5 0.00
200 5 0.00
201 3 0.00
202 12 0.00
203 23 0.00
204 176 0.03
205 166 0.02
206 19 0.00
207 200 0.03
208 18 0.00
209 16 0.00
210 121 0.02
211 54 0.01
212 188 0.03
213 541 0.08
214 418 0.06
215 1458 0.21
216 2961 0.43
217 243 0.04
218 16 0.00
219 161 0.02
220 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
AAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC
GAAAAATTGTTCGAAGGAATCGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
GAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
AATTTTTAATCCAAAGACCAA
Found at i:18753 original size:194 final size:194
Alignment explanation
Indices: 18387--18782 Score: 453
Period size: 194 Copynumber: 2.0 Consensus size: 194
18377 CAAAGACAAA
* * ** **
18387 AAGTTGTTTACAAAATGACTGTCTATTTGGACCAAATGATGCGATTTCTTGAGAAAAAAATGTTC
1 AAGTTTTTTACAAAAGGACTAACTATTTGGACCAAATGATGCGATTTCCCGAGAAAAAAATGTTC
*** * *
18452 GAAAAATTGTTTGAAGAAATGTATCGTCTTGAATACTTTAAGGAGCCAAAGTTATAAAAGAATTC
66 GAAAAATTGTCAAAAGAAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * * *
18517 GAAAAAGTGTGTAAAGCTAGAAAGTTTGGCCTAGATCCAAGAGGGAAATAATTCTCACGTAAAT
131 GAAAAAGTGTGTAAAGCTAGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
* * ***
18581 AAGTTTTTTACAAAAGGACTAACTATTTTGACCAAATGATGTGATTTCCCGAGAATGGAATGTTC
1 AAGTTTTTTACAAAAGGACTAACTATTTGGACCAAATGATGCGATTTCCCGAGAAAAAAATGTT-
*
18646 CG-AAAATTGCTCAAAAG-AATCG-ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
65 CGAAAAATTG-TCAAAAGAAAT-GTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * *
18708 CTCGAAAAAGT-T-TAACAAGTTCAG-AAGTTCNGCCAAGAACCAAGAGAGAAACAATTCTCATA
128 CTCGAAAAAGTGTGT-A-AAGCT-AGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACA
18770 TAAAT
190 TAAAT
*
18775 AAATTTTT
1 AAGTTTTT
18783 AATCCAAAGA
Statistics
Matches: 169, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
192 1 0.01
193 2 0.01
194 157 0.93
195 9 0.05
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (194 bp):
AAGTTTTTTACAAAAGGACTAACTATTTGGACCAAATGATGCGATTTCCCGAGAAAAAAATGTTC
GAAAAATTGTCAAAAGAAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
GAAAAAGTGTGTAAAGCTAGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
Found at i:25501 original size:216 final size:215
Alignment explanation
Indices: 25106--27236 Score: 2095
Period size: 216 Copynumber: 10.0 Consensus size: 215
25096 ATACTTTAAG
* * * * * * * **
25106 GAACCAGGAGAGAAACAATTCACACGTAAATATGTCTTTAATTCAAAGACAAAAAGCAGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * * * * * * *
25171 AAATGACAAACTGTTTGGACCAAATGATGCTATTTCTCAAGCATGAAAGGTTCGAAAAATTTCTA
66 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
* * * * *
25236 GAAGGAATGGATGGTCTTGAATACTTTAAGGAACCTAAGTGAAAAAAGAACTCGTAAAAGTTTGA
131 GAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGA
**
25301 CAAGTTCGGAAGTTCGGTTAA
195 CAAGTTCGGAAGTTCGGCCAA
* * ** * *
25322 GAACCAATAGAGAAATAATTCTCATGTAAATAATTTTTTAATCCAAAGACCAAAAATTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * ** * *
25387 AAATAACAGATTATTTGGACCAAATGATGCAATTTCTCGAGAATCAAATATTCAAAAAATTGCTC
66 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
* * * *
25452 CAAGGAATGAATGGTCTAGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGAAAAAGTTTGA
131 GAAGGAATG-ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGA
* * ** *
25517 AAACTTCAAAAGTACGGCCAA
195 CAAGTTCGGAAGTTCGGCCAA
** *
25538 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCAAAAGTTTTTTAC-
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * ** *
25602 AAATGGACAAACTATTTGGACCAAATGGTGCGATTTCCCGAGGCTAGAATGCTT-GAAAAATTGC
66 AAAT-GACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATG-TTCGAAAAATTGC
* * * * * *
25666 TTGAAAGG-ATCAATCATCTTGAATACTTTAAAGAACTGGAGTTATAAAAGAACTCGAAAAAGTT
129 TCG-AAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTT
* *
25730 TGTCAAGTTCGGAAGTTCGGCAAA
192 TGACAAGTTCGGAAGTTCGGCCAA
* * *
25754 GAACCAAGAGCG-AACAATTGTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTCTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* ** * *
25818 AAATGACAGATTATTTGGACCAAGGGATGCGATTTCCCGAGAATGTAATGTTCGAAAAATTGCTC
66 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
* * * *
25883 GAAGGAATCGATCATCTTTAATACTTTAAGGGAA-CGAAGTTATACAAGAACTC-AAAAAGTTTT
131 GAAGGAAT-GATCGTCTTGAATACTTTAA-GGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTG
* *
25946 AAAAGTTCAGAAGTTCGGCCAA
194 ACAAGTTCGGAAGTTCGGCCAA
* * * * * * * *
25968 GAACTAAGAGAGAAACCATTCTCACGTAAATAATTTTTTAATTCAAATACCGAAAGTTTTTTAC-
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * * * *
26032 TAATGGACAAAGTATTTGGACCAAATGATGTGATTTTTCGAGCATGGAATGTTTGAAAAATTGCT
66 AAAT-GACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCT
* * * *
26097 CGAAGGAATCGATCCTCTTGAAAACTTTAAGGAACCGAAGTTTTAAAAAAACTCGAAAAAGTTTG
130 CGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTG
**
26162 ACAAGTTCGGAAGTTCACCCAA
194 ACAAGTTCGGAAGTTCGGCCAA
* *
26184 GAACCAAGAGAGAAACAATTCTCACATAAATTAGTTTTTAATCCAAAGACTAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* *
26249 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTTGAGAATGAAATGTTCGAAAAATTGCT-
66 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
* * * * * *
26313 -------TGA-AG----G---A----AAGGAACCGAAGTTGTGAAAGAACTCAAAAAATTTTGAA
131 GAAGGAATGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAC
** * * *
26359 ATTTTCGAAAGTTTGACCAA
196 AAGTTCGGAAGTTCGGCCAA
* * *
26379 GAACCAAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAATGACAAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
** * * * * * **
26444 AAATGACTGATTATTTTGGACCAAAGGCTGTGATTTCTCGATAATGGAATTTTCGAAAAATTATT
66 AAATGACAAATTA-TTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCT
** * * * *
26509 CGAAATAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGGACTCGAGAAAGTTTA
130 CGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTG
* * * *
26574 AAAAGTTTGAAAGTTCAGCCAA
194 ACAAGTTCGGAAGTTCGGCCAA
* * * * *
26596 GAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGATCAAAAGTTTTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * * * * * ** * *
26661 AAAGGACAAACTGTTTGGACCAAATGGTGTGATTTCCCTAGGCTGGAATGTTTGGAAAATTGC-C
66 AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
* * *
26725 CAGAGGAATCGATCGTCTTGAATACTTTAAAGAACCGAAGTTATAAAAGAACTCAAAAAAGTTTG
131 GA-AGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTG
*
26790 ACAAGTTCGGAAGTTTGGCCAA
194 ACAAGTTCGGAAGTTCGGCCAA
* * * *
26812 GAACGAAGAGA-AAA-AATTCTCAAATAAATAAGTTTTTAATCCAAAAACCAACAA-TTCTTTAC
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAA-AAGTTGTTTAC
* * *
26874 AAAATGACATATTATTTGGACCATAA-GATGTGATTTCCCGAGAATGGAATGTTC-AAAAATTTG
65 AAAATGACAAATTATTTGGACCA-AATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAA-TTG
* * * * *
26937 CTCGAAGGAATGGATCATCTTGAATACTTTAAGAAACTGAAGTTATAAAGGAACTTGAAAAAGTT
128 CTCGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTT
* * *
27002 TGAAAAGTTCAGAAGTTTGGCCAA
192 TGACAAGTTCGGAAGTTCGGCCAA
* * *** * **
27026 GAACCAAGAGAGAAATC-AGTCTCACATAAATAAGTTTTTAATTCAAAGATTGAAAGTTTTTTTG
1 GAACCAAGAGAGAAA-CAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTAC
** * * * * * *
27090 AAAGGGACAAACTA-GTGGACCAAATGATGCAATTTCTCGAGCATGGAATGTTC-AGAAAAGTAC
65 AAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGA-AAAATTGC
* * * *
27153 TCAAAGGAATCGATCCTCTTGAATACTTTAAGGAACCGAAGTTTTGAAAGAACTC-AAAAATGTT
129 TCGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAA-GTT
27217 TGACAAGTTCGGAAGTTCGG
192 TGACAAGTTCGGAAGTTCGG
27237 TGATAGCATT
Statistics
Matches: 1567, Mismatches: 300, Indels: 97
0.80 0.15 0.05
Matches are distributed among these distances:
195 119 0.08
196 42 0.03
199 1 0.00
202 1 0.00
204 1 0.00
205 2 0.00
206 1 0.00
207 2 0.00
208 1 0.00
213 5 0.00
214 226 0.14
215 390 0.25
216 656 0.42
217 120 0.08
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (215 bp):
GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTTGTTTACA
AAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTC
GAAGGAATGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAC
AAGTTCGGAAGTTCGGCCAA
Found at i:26118 original size:430 final size:430
Alignment explanation
Indices: 25106--27236 Score: 2139
Period size: 430 Copynumber: 5.0 Consensus size: 430
25096 ATACTTTAAG
* * * * * * **
25106 GAACCAGGAGAGAAACAATTCACACGTAAATATGTCTTTAATTCAAAGACAAAAAGCAGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * *
25171 AAATGACAAACTGTTTGGACCAAATGATGCT-ATTTCTCAAGCATGAAAGGTTCGAAAAATTTCT
66 AAATGACAAACTATTTGGACCAAATGATG-TGATTTCTCGAGCATGGAATGTTTGAAAAATTGCT
* ** * * *
25235 AGAAGGAATGGATGGTCTTGAATACTTTAAGGAACCT-AAGTGAAAAAAGAACTCGTAAAAGTTT
130 CGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CTGAAGTTATAAAAGAACTCGAAAAAGTTT
** * * ** *
25299 GACAAGTTCGGAAGTTCGGTTAAGAACCAATAGAGAAATAATTCTCATGTAAATAATTTTTTAAT
194 GACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
* * * *
25364 CCAAAGACCAAAAATTGTTTACAAAATAACAGATTATTTGGACCAAATGATGCAATTTCTCGAGA
259 CCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGA
* * * * * *
25429 ATCAAATATTCAAAAAATTGCTCCAAGGAAT-GAATGGTCTAGAATACTTTAAGGAATCGAAGTT
324 ATGAAATGTTCGAAAAATTGCTCCAAGGAATCG-ATCGTCTTGAATACTTTAAGGAACCGAAGTT
* * *
25493 ATAAAAGAACTCGAAAAAGTTTGAAAACTTCAAAAGTACGGCCAA
388 AT-AAAGAACTC-AAAAAGTTTGAAAAGTTCAGAAGTTCGGCCAA
* *
25538 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCAAAAGTTTTTTAC-
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * *
25602 AAATGGACAAACTATTTGGACCAAATGGTGCGATTTCCCGAGGC-TAGAATGCTTGAAAAATTGC
66 AAAT-GACAAACTATTTGGACCAAATGATGTGATTTCTCGA-GCATGGAATGTTTGAAAAATTGC
* ** * *
25666 TTGAAAGG-ATCAATCATCTTGAATACTTTAAAGAACTGGAGTTATAAAAGAACTCGAAAAAGTT
129 TCG-AAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGAAAAAGTT
* * * *
25730 TGTCAAGTTCGGAAGTTCGGCAAAGAACCAAGAGCG-AACAATTGTCACATAAATAAGTTTTTAA
193 TGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* * ** *
25794 TCCAAAGACCAAAAGTTCTTTACAAAATGACAGATTATTTGGACCAAGGGATGCGATTTCCCGAG
258 TCCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAG
* * * *
25859 AATGTAATGTTCGAAAAATTGCTCGAAGGAATCGATCATCTTTAATACTTTAAGGGAA-CGAAGT
323 AATGAAATGTTCGAAAAATTGCTCCAAGGAATCGATCGTCTTGAATACTTTAA-GGAACCGAAGT
*
25923 TATACAAGAACTCAAAAAGTTTTAAAAGTTCAGAAGTTCGGCCAA
387 TATA-AAGAACTCAAAAAGTTTGAAAAGTTCAGAAGTTCGGCCAA
* * * * * * *
25968 GAACTAAGAGAGAAACCATTCTCACGTAAATAATTTTTTAATTCAAATACCGAAAGTTTTTTAC-
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * *
26032 TAATGGACAAAGTATTTGGACCAAATGATGTGATTTTTCGAGCATGGAATGTTTGAAAAATTGCT
66 AAAT-GACAAACTATTTGGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGAAAAATTGCT
* * * * * *
26097 CGAAGGAATCGATCCTCTTGAAAACTTTAAGGAACCGAAGTTTTAAAAAAACTCGAAAAAGTTTG
130 CGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGAAAAAGTTTG
** *
26162 ACAAGTTCGGAAGTTCACCCAAGAACCAAGAGAGAAACAATTCTCACATAAATTAGTTTTTAATC
195 ACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATC
* *
26227 CAAAGACTAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTTGAGAA
260 CAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAA
* *
26292 TGAAATGTTCGAAAAATTGCT--------T-GA-AG----G---A----AAGGAACCGAAGTTGT
325 TGAAATGTTCGAAAAATTGCTCCAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* ** * *
26336 GAAAGAACTCAAAAAATTTTGAAATTTTC-GAAAGTTTGACCAA
390 -AAAGAACTC-AAAAAGTTTGAAAAGTTCAG-AAGTTCGGCCAA
* * * *
26379 GAACCAAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAATGACAAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
** * * * ** **
26444 AAATGACTGATTATTTTGGACCAAAGGCTGTGATTTCTCGATAATGGAAT-TTTCGAAAAATTAT
66 AAATGACAAACTA-TTTGGACCAAATGATGTGATTTCTCGAGCATGGAATGTTT-GAAAAATTGC
** * * * * *
26508 TCGAAATAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGGACTCGAGAAAGTTT
129 TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGAAAAAGTTT
* * * * * * *
26573 AAAAAGTTTGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAAT
194 GACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
* * * * * * * * * * *
26638 TCAAAGATCAAAAGTTTTTTACAAAAGGACAAACTGTTTGGACCAAATGGTGTGATTTCCCTAGG
259 CCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGA
* * * * *
26703 CTGGAATGTTTGGAAAATTGC-CCAGAGGAATCGATCGTCTTGAATACTTTAAAGAACCGAAGTT
324 ATGAAATGTTCGAAAAATTGCTCCA-AGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTT
* * *
26767 ATAAAAGAACTCAAAAAAGTTTGACAAGTTCGGAAGTTTGGCCAA
388 AT-AAAGAACTC-AAAAAGTTTGAAAAGTTCAGAAGTTCGGCCAA
* * * * *
26812 GAACGAAGAGA-AAA-AATTCTCAAATAAATAAGTTTTTAATCCAAAAACCAACAA-TTCTTTAC
1 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA-AAGTTGTTTAC
* * * * *
26874 AAAATGACATATTATTTGGACCATAA-GATGTGATTTCCCGAGAATGGAATG-TTCAAAAATTTG
65 AAAATGACAAACTATTTGGACCA-AATGATGTGATTTCTCGAGCATGGAATGTTTGAAAAA-TTG
* * *
26937 CTCGAAGGAATGGATCATCTTGAATACTTTAAGAAACTGAAGTTATAAAGGAACTTGAAAAAGTT
128 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGAAAAAGTT
* * * *
27002 TGAAAAGTTCAGAAGTTTGGCCAAGAACCAAGAGAGAAATC-AGTCTCACATAAATAAGTTTTTA
193 TGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAA-CAATTCTCACATAAATAAGTTTTTA
* *** * ** ** * * *
27066 ATTCAAAGATTGAAAGTTTTTTTGAAAGGGACAAACTA-GTGGACCAAATGATGCAATTTCTCGA
257 ATCCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGA
* * * * * *
27130 GCATGGAATGTTC-AGAAAAGTACTCAAAGGAATCGATCCTCTTGAATACTTTAAGGAACCGAAG
322 GAATGAAATGTTCGA-AAAATTGCTCCAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAG
* * *
27194 TTTTGAAAGAACTCAAAAATGTTTGACAAGTTCGGAAGTTCGG
386 TTAT-AAAGAACTCAAAAA-GTTTGAAAAGTTCAGAAGTTCGG
27237 TGATAGCATT
Statistics
Matches: 1417, Mismatches: 233, Indels: 101
0.81 0.13 0.06
Matches are distributed among these distances:
409 4 0.00
410 19 0.01
411 87 0.06
412 223 0.16
414 1 0.00
420 1 0.00
421 2 0.00
422 3 0.00
423 1 0.00
426 1 0.00
428 5 0.00
429 117 0.08
430 395 0.28
431 307 0.22
432 185 0.13
433 65 0.05
434 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (430 bp):
GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
AAATGACAAACTATTTGGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTC
GAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGAAAAAGTTTGA
CAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCC
AAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTGGACCAAATGATGCGATTTCTCGAGAAT
GAAATGTTCGAAAAATTGCTCCAAGGAATCGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
AAGAACTCAAAAAGTTTGAAAAGTTCAGAAGTTCGGCCAA
Found at i:26459 original size:195 final size:196
Alignment explanation
Indices: 26125--26505 Score: 534
Period size: 195 Copynumber: 1.9 Consensus size: 196
26115 TGAAAACTTT
* * *
26125 AAGGAACCGAAGTTTTAAAAAAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCACCCAAGAACCA
1 AAGGAACCGAAGTTGTAAAAAAACTCAAAAAAGTTTGACAAGTTCGAAAGTTCACCCAAGAACCA
* *
26190 AGAGAGAAACAATTCTCACATAAATTAGTTTTTAATCCAAAGACTAAAAGTTGTTTACAAAATGA
66 AGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAAATGA
* *
26255 CAAATTA-TTTGGACCAAATGATGCGATTTCTTGAGAATGAAATGTTCGAAAAATTGCTTGAAGG
131 CAAATTATTTTGGACCAAAGGATGCGATTTCTCGAGAATGAAATGTTCGAAAAATTGCTTGAAGG
26319 A
196 A
* * * * *
26320 AAGGAACCGAAGTTGTGAAAGAACTCAAAAAATTTTGA-AATTTTCGAAAGTTTGA-CCAAGAAC
1 AAGGAACCGAAGTTGTAAAAAAACTCAAAAAAGTTTGACAA-GTTCGAAAG-TTCACCCAAGAAC
* *
26383 CAAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAATGACAAAAAGTTGTTTACAAAAT
64 CAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAAAT
** * * * * *
26448 GACTGATTATTTTGGACCAAAGGCTGTGATTTCTCGATAATGGAATTTTCGAAAAATT
129 GACAAATTATTTTGGACCAAAGGATGCGATTTCTCGAGAATGAAATGTTCGAAAAATT
26506 ATTCGAAATA
Statistics
Matches: 162, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
194 2 0.01
195 116 0.72
196 44 0.27
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (196 bp):
AAGGAACCGAAGTTGTAAAAAAACTCAAAAAAGTTTGACAAGTTCGAAAGTTCACCCAAGAACCA
AGAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAAATGA
CAAATTATTTTGGACCAAAGGATGCGATTTCTCGAGAATGAAATGTTCGAAAAATTGCTTGAAGG
A
Found at i:26851 original size:214 final size:216
Alignment explanation
Indices: 26323--27233 Score: 903
Period size: 214 Copynumber: 4.2 Consensus size: 216
26313 TGAAGGAAAG
* * * ** * *
26323 GAACCGAAGTTGTGAAAGAACTCAAAAAATTTTGAAATTTTCGAAAGTTTGACCAAGAACCAAGA
1 GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTTTGGCCAAGAACCAAGA
* * * *
26388 GAGAAATAATTCTCACATAAATAAGTTTTTAATCCAATGA-CAAAAAGTTGTTTACAAAATGACT
66 GAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGATC-AAAAGTTTTTTACAAAAGGACA
* * * * * * * **
26452 GATTATTTTGGACCAAAGGCTGTGATTTCTCGATAATGGAAT-TTTCGAAAAATTATTCGAAATA
130 AACTAGTTTGGACCAAA-GATGTGATTTCCCGAGAATGGAATGTTT-GAAAAATTACTCGAAGGA
* * *
26516 ATGGATCGTCTTAAATACTTTAAG
193 ATCGATCGTCTTGAATACTTTAAA
* * * * * * ** *
26540 GAACCGAAGTTATAAAAGGACTCGAGAAAGTTTAAAAAGTTTGAAAGTTCAGCCAAGAACAAAGA
1 GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTTTGGCCAAGAACCAAGA
* * *
26605 GAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGATCAAAAGTTTTTTACAAAAGGACAA
66 GAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGATCAAAAGTTTTTTACAAAAGGACAA
* * ** * * *
26670 ACT-GTTTGGACCAAATGGTGTGATTTCCCTAGGCTGGAATGTTTGGAAAATTGC-CCAGAGGAA
131 ACTAGTTTGGACCAAA-GATGTGATTTCCCGAGAATGGAATGTTTGAAAAATTACTCGA-AGGAA
26733 TCGATCGTCTTGAATACTTTAAA
194 TCGATCGTCTTGAATACTTTAAA
* *
26756 GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAACGAAGA
1 GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTTTGGCCAAGAACCAAGA
* * * * *
26821 GA-AAA-AATTCTCAAATAAATAAGTTTTTAATCCAAAAACCAACAA-TTCTTTACAAAATGACA
66 GAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGATCAA-AAGTTTTTTACAAAAGGACA
* * * *
26883 TATTA-TTTGGACCATAAGATGTGATTTCCCGAGAATGGAATG-TTCAAAAATTTGCTCGAAGGA
130 AACTAGTTTGGACCA-AAGATGTGATTTCCCGAGAATGGAATGTTTGAAAAA-TTACTCGAAGGA
* *
26946 ATGGATCATCTTGAATACTTT-AA
193 ATCGATCGTCTTGAATACTTTAAA
* * ** *
26969 GAAACTGAAGTTATAAAGGAACTTGAAAAAGTTTGAAAAGTTCAGAAGTTTGGCCAAGAACCAAG
1 G-AACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTTTGGCCAAGAACCAAG
* * * ** ** *
27034 AGAGAAATCAGTCTCACATAAATAAGTTTTTAATTCAAAGATTGAAAGTTTTTTTGAAAGGGACA
65 AGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGATCAAAAGTTTTTTACAAAAGGACA
** * * * * *
27099 AACTAG--TGGACCAAATGATGCAATTTCTCGAGCATGGAATG-TTCAGAAAAGTACTCAAAGGA
130 AACTAGTTTGGACCAAA-GATGTGATTTCCCGAGAATGGAATGTTTGA-AAAATTACTCGAAGGA
* *
27161 ATCGATCCTCTTGAATACTTTAAG
193 ATCGATCGTCTTGAATACTTTAAA
* * * *
27185 GAACCGAAGTTTTGAAAGAACTCAAAAATGTTTGACAAGTTCGGAAGTT
1 GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTT
27234 CGGTGATAGC
Statistics
Matches: 569, Mismatches: 109, Indels: 34
0.80 0.15 0.05
Matches are distributed among these distances:
213 9 0.02
214 167 0.29
215 115 0.20
216 166 0.29
217 111 0.20
218 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (216 bp):
GAACCGAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCGGAAGTTTGGCCAAGAACCAAGA
GAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGATCAAAAGTTTTTTACAAAAGGACAA
ACTAGTTTGGACCAAAGATGTGATTTCCCGAGAATGGAATGTTTGAAAAATTACTCGAAGGAATC
GATCGTCTTGAATACTTTAAA
Found at i:27201 original size:842 final size:840
Alignment explanation
Indices: 25486--27161 Score: 1971
Period size: 842 Copynumber: 2.0 Consensus size: 840
25476 TTTAAGGAAT
* * * ** * ** *
25486 CGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAACTTCAAAAGTACGGCCAAGAACCAAGAGAGA
1 CGAAGTTGTGAAAGAACTC-AAAAATTTTGAAATTTTCGAAAGTTTGACCAAGAACCAAGAGAGA
** * *
25551 AACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCAAAAGTTTTTTACAAATGGACAAACTA
65 AACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAATGGACAAACTA
** * *
25616 TTTGGACCAAATGGTGCGATTTCCCGAGGCTAGAATGCTTGAAAAATTGCTTGAAAGGATCAATC
130 TTTGGACCAAATGGTGCGATTTCCCGAGAATAGAATGCTTGAAAAATTGATTGAAAGAATCAATC
* * * *** *
25681 ATCTTGAATACTTTAAAGAACTGGAGTTATAAAAGAACTCGAAAAAGTTTGTCAAGTTCGGAAGT
195 ATCTTAAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTAAAAAGTTCGAAAGT
* * * * *
25746 TCGGCAAAGAACCAAGAGCGAACAATTGTCACATAAATAAGTTTTTAATCCAAAGACCAAAAGTT
260 TCAGCAAAGAACAAAGAGAGAACAATTCTCACATAAATAAGCTTTTAATCCAAAGACCAAAAGTT
* * * *
25811 CTTTACAAAATGACAGATTATTTGGACCAAGGGATGCGATTTCCCGAGAATGTAATGTTCGAAAA
325 CTTTACAAAAGGACAAACTATTTGGACCAAGGGATGCGATTTCCCGAGAATGGAATGTTCGAAAA
* * * *
25876 ATTGCTCGAAGGAATCGATCATCTTTAATACTTTAAGGGAACGAAGTTATACAAGAACTCAAAAA
390 ATTGCCCGAAGGAATCGATCATCTTGAATACTTTAAGAGAACGAAGTTATAAAAGAACTCAAAAA
* * * ** *
25941 GTTTTAAAAGTTCAGAAGTTCGGCCAAGAACTAAGAGAGAAACCATTCTCACGTAAATAATTTTT
455 GTTTGAAAAGTTCAGAAGTTCGGCCAAGAACGAAGAGAGAAACAATTCTCAAATAAATAAGTTTT
* * * * * **
26006 TAATTCAAATACCGAAAGTTTTTTACTAATGGACAAAGTATTTGGACCAAATGATGTGATTTTTC
520 TAATCCAAAAACCGAAAATTCTTTACAAATGGACAAAGTATTTGGACCAAATGATGTGATTTCCC
* * * *
26071 GAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATCGATCCTCTTGAAAACTTTAAGGAACCGAA
585 GAGAATGGAATGTTTCAAAAATTGCTCGAAGGAATCGATCATCTTGAAAACTTTAAGAAACCGAA
* * *
26136 GTTTTAAAAAAACTCGAAAAAGTTTGACAAGTTCGGAAGTTCACCCAAGAACCAAGAGAGAAACA
650 GTTATAAAAAAACTCGAAAAAGTTTGAAAAGTTCAGAAGTTCACCCAAGAACCAAGAGAGAAACA
* * * * *
26201 ATTCTCACATAAATTAGTTTTTAATCCAAAGACTAAAAGTTGTTTACAAAATGACAAATTATTTG
715 AGTCTCACATAAATAAGTTTTTAATCCAAAGACTAAAAGTTGTTTACAAAAGGACAAACTATGTG
* * * * ** *
26266 GACCAAATGATGCGATTTCTTGAGAATGAAATGTTCGAAAAATTGCTTGAAGGAAAGGAAC
780 GACCAAATGATGCAATTTCTCGAGAATGAAATGTTCGAAAAAGTACTCAAAGGAAACGAAC
26327 CGAAGTTGTGAAAGAACTCAAAAAATTTTGAAATTTTCGAAAGTTTGACCAAGAACCAAGAGAGA
1 CGAAGTTGTGAAAGAACTC-AAAAATTTTGAAATTTTCGAAAGTTTGACCAAGAACCAAGAGAGA
* * ** *
26392 AATAATTCTCACATAAATAAGTTTTTAATCCAATGACAAAAAGTTGTTTACAAAAT-GACTGATT
65 AACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTAC-AAATGGACAAACT
* * * * * *
26456 ATTTTGGACCAAA-GGCTGTGATTTCTCGATAATGGAAT-TTTCGAAAAATT-ATTCGAAATAAT
129 A-TTTGGACCAAATGG-TGCGATTTCCCGAGAATAGAATGCTT-GAAAAATTGATT-GAAAGAAT
** * * * * *
26518 GGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGGACTCGAGAAAGTTTAAAAAGTTTG
190 CAATCATCTTAAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTAAAAAGTTCG
* * *
26583 AAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGATCA
255 AAAGTTCAGCAAAGAACAAAGAGAG-AACAATTCTCACATAAATAAGCTTTTAATCCAAAGACCA
* * * * * **
26648 AAAGTTTTTTACAAAAGGACAAACTGTTTGGACCAAATGG-TGTGATTTCCCTAGGCTGGAATGT
319 AAAGTTCTTTACAAAAGGACAAACTATTTGGACC-AAGGGATGCGATTTCCCGAGAATGGAATGT
* * *
26712 TTGGAAAATTGCCC-AGAGGAATCGATCGTCTTGAATACTTTAA-AGAACCGAAGTTATAAAAGA
383 TCGAAAAATTGCCCGA-AGGAATCGATCATCTTGAATACTTTAAGAGAA-CGAAGTTATAAAAGA
* * *
26775 ACTCAAAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAACGAAGAGA-AAA-AATTCTCAAATA
446 ACTC-AAAAAGTTTGAAAAGTTCAGAAGTTCGGCCAAGAACGAAGAGAGAAACAATTCTCAAATA
* *
26838 AATAAGTTTTTAATCCAAAAACC-AACAATTCTTTACAAAAT-GACATATTATTTGGACCATAA-
510 AATAAGTTTTTAATCCAAAAACCGAA-AATTCTTTAC-AAATGGACAAAGTATTTGGACCA-AAT
* *
26900 GATGTGATTTCCCGAGAATGGAATG-TTCAAAAATTTGCTCGAAGGAATGGATCATCTTGAATAC
572 GATGTGATTTCCCGAGAATGGAATGTTTCAAAAA-TTGCTCGAAGGAATCGATCATCTTGAAAAC
* ** * ***
26964 TTTAAGAAACTGAAGTTATAAAGGAACTTGAAAAAGTTTGAAAAGTTCAGAAGTTTGGCCAAGAA
636 TTTAAGAAACCGAAGTTATAAAAAAACTCGAAAAAGTTTGAAAAGTTCAGAAGTTCACCCAAGAA
* * * * **
27029 CCAAGAGAGAAATC-AGTCTCACATAAATAAGTTTTTAATTCAAAGATTGAAAGTTTTTTTGAAA
701 CCAAGAGAGAAA-CAAGTCTCACATAAATAAGTTTTTAATCCAAAGACTAAAAGTTGTTTACAAA
* * *
27093 GGGACAAACTA-GTGGACCAAATGATGCAATTTCTCGAGCATGGAATGTTC-AGAAAAGTACTCA
765 AGGACAAACTATGTGGACCAAATGATGCAATTTCTCGAGAATGAAATGTTCGA-AAAAGTACTCA
27156 AAGGAA
829 AAGGAA
27162 TCGATCCTCT
Statistics
Matches: 696, Mismatches: 123, Indels: 32
0.82 0.14 0.04
Matches are distributed among these distances:
840 1 0.00
841 168 0.24
842 339 0.49
843 146 0.21
844 42 0.06
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (840 bp):
CGAAGTTGTGAAAGAACTCAAAAATTTTGAAATTTTCGAAAGTTTGACCAAGAACCAAGAGAGAA
ACAATTCTCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAATGGACAAACTAT
TTGGACCAAATGGTGCGATTTCCCGAGAATAGAATGCTTGAAAAATTGATTGAAAGAATCAATCA
TCTTAAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTAAAAAGTTCGAAAGTT
CAGCAAAGAACAAAGAGAGAACAATTCTCACATAAATAAGCTTTTAATCCAAAGACCAAAAGTTC
TTTACAAAAGGACAAACTATTTGGACCAAGGGATGCGATTTCCCGAGAATGGAATGTTCGAAAAA
TTGCCCGAAGGAATCGATCATCTTGAATACTTTAAGAGAACGAAGTTATAAAAGAACTCAAAAAG
TTTGAAAAGTTCAGAAGTTCGGCCAAGAACGAAGAGAGAAACAATTCTCAAATAAATAAGTTTTT
AATCCAAAAACCGAAAATTCTTTACAAATGGACAAAGTATTTGGACCAAATGATGTGATTTCCCG
AGAATGGAATGTTTCAAAAATTGCTCGAAGGAATCGATCATCTTGAAAACTTTAAGAAACCGAAG
TTATAAAAAAACTCGAAAAAGTTTGAAAAGTTCAGAAGTTCACCCAAGAACCAAGAGAGAAACAA
GTCTCACATAAATAAGTTTTTAATCCAAAGACTAAAAGTTGTTTACAAAAGGACAAACTATGTGG
ACCAAATGATGCAATTTCTCGAGAATGAAATGTTCGAAAAAGTACTCAAAGGAAACGAAC
Done.