Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006878.1 Kokia drynarioides strain JFW-HI SEQ_121479, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17583
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35


Found at i:4205 original size:16 final size:16

Alignment explanation


    Indices: 4184--4214  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       4174 ACTGACCACA

                            
       4184 ATTCTATCCCATTACG
          1 ATTCTATCCCATTACG

                   *       
       4200 ATTCTATTCCATTAC
          1 ATTCTATCCCATTAC

       4215 AGTGAACCAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.26, C:0.29, G:0.03, T:0.42


Consensus pattern (16 bp):   
ATTCTATCCCATTACG

Found at i:9491 original size:29 final size:29

Alignment explanation


    Indices: 9458--9517  Score: 111
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       9448 TTTAACATTT

                 *                       
       9458 TGATATTACACACTTACCTTGCACACACG
          1 TGATAATACACACTTACCTTGCACACACG

                                         
       9487 TGATAATACACACTTACCTTGCACACACG
          1 TGATAATACACACTTACCTTGCACACACG

              
       9516 TG
          1 TG

       9518 CTCGAACTCG


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.32, C:0.30, G:0.12, T:0.27


Consensus pattern (29 bp):   
TGATAATACACACTTACCTTGCACACACG

Done.