Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006879.1 Kokia drynarioides strain JFW-HI SEQ_121480, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2418
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37


Found at i:881 original size:31 final size:31

Alignment explanation


    Indices: 821--881  Score: 81
    Period size: 31  Copynumber: 2.0  Consensus size: 31

        811 TTTTAATTTA

                      *                    
        821 ATCAATTTTAGTTTTTATATCTTTTGAATTG
          1 ATCAATTTTAATTTTTATATCTTTTGAATTG

                                            
        852 ATCAATTTTAATCTTTT-TAT-TTTTCGAATT
          1 ATCAATTTTAAT-TTTTATATCTTTT-GAATT

        882 TTAAATTATT


Statistics
Matches: 27,  Mismatches: 1, Indels: 4
        0.84            0.03        0.12

Matches are distributed among these distances:
  30    4  0.15
  31   19  0.70
  32    4  0.15

ACGTcount: A:0.26, C:0.08, G:0.07, T:0.59


Consensus pattern (31 bp):   
ATCAATTTTAATTTTTATATCTTTTGAATTG
Done.