Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000689.1 Kokia drynarioides strain JFW-HI SEQ_111689, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2653
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.27


Found at i:1054 original size:15 final size:15

Alignment explanation


    Indices: 1034--1062  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       1024 TGAGCAAACT

                           
       1034 TTGCACCAGTAGACC
          1 TTGCACCAGTAGACC

                          
       1049 TTGCACCAGTAGAC
          1 TTGCACCAGTAGAC

       1063 AAGTCAGACA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21


Consensus pattern (15 bp):   
TTGCACCAGTAGACC
Done.