Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006890.1 Kokia drynarioides strain JFW-HI SEQ_121491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1107
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38


Found at i:12 original size:7 final size:7

Alignment explanation


    Indices: 1--26  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

                   
          1 AGGGAGA
          1 AGGGAGA

                   
          8 AGGGAGA
          1 AGGGAGA

                   
         15 AGGGAGA
          1 AGGGAGA

                 
         22 AGGGA
          1 AGGGA

         27 ATATTATGAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00


Consensus pattern (7 bp):   
AGGGAGA
Done.