Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006891.1 Kokia drynarioides strain JFW-HI SEQ_121492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1714
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34


Found at i:243 original size:11 final size:12

Alignment explanation


    Indices: 228--260  Score: 50
    Period size: 11  Copynumber: 2.8  Consensus size: 12

        218 TATAATAAAT

                        
        228 ATAAATTTAAT-
          1 ATAAATTTAATA

            *           
        239 TTAAATTTAATA
          1 ATAAATTTAATA

                      
        251 ATAAATTTAA
          1 ATAAATTTAA

        261 AAACAAATAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  11   10  0.53
  12    9  0.47

ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45


Consensus pattern (12 bp):   
ATAAATTTAATA
Done.