Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006894.1 Kokia drynarioides strain JFW-HI SEQ_121495, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6503
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34


Found at i:5971 original size:23 final size:23

Alignment explanation


    Indices: 5939--5984  Score: 65
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       5929 GCTGGGGAAA

                             *     
       5939 CAGTAAGCACAAACAGTTCAATC
          1 CAGTAAGCACAAACAGTGCAATC

                 *     *           
       5962 CAGTAGGCACACACAGTGCAATC
          1 CAGTAAGCACAAACAGTGCAATC

       5985 AATAGGCGTA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.39, C:0.28, G:0.17, T:0.15


Consensus pattern (23 bp):   
CAGTAAGCACAAACAGTGCAATC
Done.