Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006906.1 Kokia drynarioides strain JFW-HI SEQ_121507, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6088
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:4834 original size:24 final size:24

Alignment explanation


    Indices: 4802--4881  Score: 126
    Period size: 24  Copynumber: 3.3  Consensus size: 24

       4792 TTAAACTCTG

                                    
       4802 TCTGGGCTCGTAAGAGCTAACCAT
          1 TCTGGGCTCGTAAGAGCTAACCAT

                                    
       4826 TCTGGGCTCGTAAGAGCTAACCAT
          1 TCTGGGCTCGTAAGAGCTAACCAT

                      *              
       4850 TCTAGGG-TCATAAGAGCTAACCAT
          1 TCT-GGGCTCGTAAGAGCTAACCAT

             *      
       4874 TTTGGGCT
          1 TCTGGGCT

       4882 TGTGAGGGCT


Statistics
Matches: 52,  Mismatches: 2, Indels: 4
        0.90            0.03        0.07

Matches are distributed among these distances:
  23    3  0.06
  24   46  0.88
  25    3  0.06

ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28


Consensus pattern (24 bp):   
TCTGGGCTCGTAAGAGCTAACCAT
Done.