genome.fa.s691.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000691.1 Kokia drynarioides strain JFW-HI SEQ_111691, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167807

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2717--2755	17	2.3	17	90	0	60	17	28	0	53	1.44
11896--11935	16	2.6	15	84	4	53	75	7	0	17	1.03
11975--12022	19	2.5	19	79	3	60	70	4	4	20	1.21
12918--13704	98	8.0	99	75	5	386	18	22	17	41	1.91
13013--13607	147	4.0	147	82	3	615	18	22	17	41	1.90
13035--13734	49	14.3	49	75	6	414	18	23	17	40	1.91
13035--13740	98	7.2	99	75	6	504	18	23	17	40	1.91
14823--14910	46	1.9	46	90	4	142	15	20	15	47	1.82
16430--16497	33	2.1	33	91	0	109	36	11	7	44	1.69
22388--22444	22	2.5	22	80	11	62	63	5	1	29	1.27
22818--22851	13	2.5	14	85	4	52	76	5	0	17	0.98
22887--22928	15	2.6	16	74	11	50	66	9	2	21	1.32
23840--23880	22	1.9	21	85	5	55	56	4	0	39	1.21
24176--24258	16	5.2	16	82	0	76	30	18	2	49	1.60
25741--25780	2	20.5	2	94	5	73	47	0	0	52	1.00
28340--28403	31	2.1	31	100	0	128	26	23	6	43	1.77
28473--28536	31	2.1	31	100	0	128	29	20	6	43	1.76
30255--30296	12	3.4	12	93	3	66	50	11	0	38	1.40
32452--32588	39	3.4	40	81	6	161	51	5	18	24	1.68
32561--32632	24	3.0	24	79	0	81	51	6	23	18	1.70
38680--38717	17	2.2	17	95	0	67	18	23	26	31	1.97
40565--40669	41	2.6	39	83	6	129	49	4	19	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40565--40669	40	2.5	40	84	6	131	49	4	19	26	1.68
42862--42892	16	1.9	16	93	0	53	22	16	0	61	1.34
47599--47655	3	19.0	3	79	13	64	1	29	1	66	1.12
64060--64566	253	2.0	253	99	0	996	35	14	22	28	1.93
67833--67940	47	2.3	46	84	6	128	26	16	19	37	1.93
68819--69056	119	2.0	119	98	0	458	10	11	25	51	1.71
76053--76129	30	2.6	30	82	0	91	28	5	27	38	1.78
76039--76153	30	3.9	29	71	6	88	34	6	22	36	1.79
76039--76176	59	2.3	59	79	7	154	36	5	22	35	1.78
77094--77197	37	2.8	37	95	0	181	8	12	47	31	1.72
77722--77783	22	2.9	22	72	15	58	16	3	38	41	1.64
78419--78608	94	2.1	89	90	4	290	32	15	20	31	1.94
89030--89075	24	1.9	24	90	0	74	28	15	6	50	1.69
90686--90728	18	2.4	18	88	0	59	39	23	18	18	1.92
99850--99904	24	2.2	24	90	3	83	27	14	7	50	1.69
110211--110387	24	7.4	24	78	7	173	24	21	23	31	1.99
110213--110389	72	2.5	72	87	1	250	24	21	23	31	1.99
110213--110389	47	3.7	47	77	9	180	24	21	23	31	1.99
119374--119420	16	2.8	17	77	9	51	72	4	0	23	1.02
125671--125776	54	2.0	54	84	0	140	29	18	22	29	1.98
125909--125958	24	2.0	25	81	11	59	26	20	4	50	1.66
153382--153428	22	2.1	23	88	11	71	51	4	14	29	1.62

Tables:   1

The End!