Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006930.1 Kokia drynarioides strain JFW-HI SEQ_121533, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7522
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38


Found at i:3052 original size:21 final size:21

Alignment explanation


    Indices: 3028--3067  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       3018 AATCTTAAAA

                                  
       3028 TTTAATATATGA-TTTTTATAT
          1 TTTAAT-TATGACTTTTTATAT

                   *           
       3049 TTTAATTTTGACTTTTTAT
          1 TTTAATTATGACTTTTTAT

       3068 TTTGACAATA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    4  0.24
  21   13  0.76

ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65


Consensus pattern (21 bp):   
TTTAATTATGACTTTTTATAT

Found at i:5492 original size:26 final size:26

Alignment explanation


    Indices: 5437--5495  Score: 73
    Period size: 26  Copynumber: 2.3  Consensus size: 26

       5427 TAATTTTTCA

                 *                  * 
       5437 TTTTATAATAATTAGTTCGAATGAGC
          1 TTTTAAAATAATTAGTTCGAATGAAC

                     *          *    *
       5463 TTTTAAAATGATTAGTTCGACTGAAT
          1 TTTTAAAATAATTAGTTCGAATGAAC

                   
       5489 TTTTAAA
          1 TTTTAAA

       5496 GAAAAATTTA


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  26   28  1.00

ACGTcount: A:0.36, C:0.07, G:0.14, T:0.44


Consensus pattern (26 bp):   
TTTTAAAATAATTAGTTCGAATGAAC
Done.