Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006931.1 Kokia drynarioides strain JFW-HI SEQ_121534, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6255
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.37


Found at i:2756 original size:19 final size:20

Alignment explanation


    Indices: 2728--2766  Score: 62
    Period size: 19  Copynumber: 2.0  Consensus size: 20

       2718 CCGCCCATAT

                 *              
       2728 AAAATTTTTATTTT-TTTTA
          1 AAAATATTTATTTTATTTTA

                                
       2747 AAAATATTTATTTTATTTTA
          1 AAAATATTTATTTTATTTTA

       2767 TTTTATTTTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19   13  0.72
  20    5  0.28

ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64


Consensus pattern (20 bp):   
AAAATATTTATTTTATTTTA

Found at i:5472 original size:12 final size:12

Alignment explanation


    Indices: 5449--5479  Score: 53
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       5439 TCTCTTTCTA

                         
       5449 TATTTCTCTTTTG
          1 TATTT-TCTTTTG

                        
       5462 TATTTTCTTTTG
          1 TATTTTCTTTTG

                  
       5474 TATTTT
          1 TATTTT

       5480 GACACTTTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  12   13  0.72
  13    5  0.28

ACGTcount: A:0.10, C:0.10, G:0.06, T:0.74


Consensus pattern (12 bp):   
TATTTTCTTTTG
Done.