Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006939.1 Kokia drynarioides strain JFW-HI SEQ_121542, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5509
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:3002 original size:21 final size:21

Alignment explanation


    Indices: 2978--3026  Score: 89
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       2968 GAAAGAATAA

                                 
       2978 ACCCAAATCAAAGTGGTTATC
          1 ACCCAAATCAAAGTGGTTATC

                              *  
       2999 ACCCAAATCAAAGTGGTTGTC
          1 ACCCAAATCAAAGTGGTTATC

                   
       3020 ACCCAAA
          1 ACCCAAA

       3027 ACTCTGATCA


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20


Consensus pattern (21 bp):   
ACCCAAATCAAAGTGGTTATC
Done.