Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000694.1 Kokia drynarioides strain JFW-HI SEQ_111694, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 689

Length: 1149
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22


Found at i:578 original size:139 final size:138

Alignment explanation


    Indices: 328--718  Score: 542
    Period size: 139  Copynumber: 2.9  Consensus size: 138

        318 AAACTGTTAG

                 *    *               **                                  *  
        328 CTTCCTGATGAGATACTGAGAAGTGACCCAAATTCGTCTTCCTGATGAGATACAGAGAAACGAAT
          1 CTTCCAGATGGGATACTGAGAAGTGAATCAAATTCGTCTTCCTGATGAGAT-CAGAGAAACGGAT

                                                                             
        393 TGAAACAGTGATGGGATCATCTTCCTGATGAGACATTGAGAAGAAGACCCAAACGAGGCTCGAAA
         65 TGAAACAGTGATGGGATCATCTTCCTGATGAGACATTGAGAAGAAGACCCAAACGAGGCTCGAAA

                     
        458 CAAACAAAT
        130 CAAACAAAT

                                               *                *            
        467 CTTCCAGATGGGATACTGAGAAGTGAATCAAATTCATCTTCCTGATGAGATGTAGAGAAACGGAT
          1 CTTCCAGATGGGATACTGAGAAGTGAATCAAATTCGTCTTCCTGATGAGAT-CAGAGAAACGGAT

                                              *              *               
        532 TGAAACAGTGATGGGATCATCTTCCTGATGAGACGTTGAGAAGAAGACCTAAACGAGGCTCGAAA
         65 TGAAACAGTGATGGGATCATCTTCCTGATGAGACATTGAGAAGAAGACCCAAACGAGGCTCGAAA

             * *     
        597 CGAGCAAAT
        130 CAAACAAAT

                                                                       *     
        606 CTTCCAGATGAGG-TACTGAGAAGTGAATCAAATTCGTCTTCCTGAT---A-CAGAGAAGCGGAT
          1 CTTCCAGATG-GGATACTGAGAAGTGAATCAAATTCGTCTTCCTGATGAGATCAGAGAAACGGAT

                    **  **  *                * *                  
        666 TGAAACAGCAATTTGACCATCTTCCTGATGAGATACTGAGAAGAAGA-CCAAAC
         65 TGAAACAGTGATGGGATCATCTTCCTGATGAGACATTGAGAAGAAGACCCAAAC

        719 CCAGCCCACG


Statistics
Matches: 227,  Mismatches: 24, Indels: 8
        0.88            0.09        0.03

Matches are distributed among these distances:
 133    5  0.02
 134   50  0.22
 136    1  0.00
 139  169  0.74
 140    2  0.01

ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22


Consensus pattern (138 bp):   
CTTCCAGATGGGATACTGAGAAGTGAATCAAATTCGTCTTCCTGATGAGATCAGAGAAACGGATT
GAAACAGTGATGGGATCATCTTCCTGATGAGACATTGAGAAGAAGACCCAAACGAGGCTCGAAAC
AAACAAAT

Done.