Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006940.1 Kokia drynarioides strain JFW-HI SEQ_121543, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5382
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.34


Found at i:4423 original size:41 final size:41

Alignment explanation


    Indices: 4373--4490  Score: 182
    Period size: 41  Copynumber: 2.9  Consensus size: 41

       4363 TTCCTTTAAC

                *            *                *      
       4373 CATATTCTCATTCTCATTTCGAGACATGAGTCTTTCTTATT
          1 CATAATCTCATTCTCATCTCGAGACATGAGTCTTCCTTATT

                *         *                          
       4414 CATAGTCTCATTCTGATCTCGAGACATGAGTCTTCCTTATT
          1 CATAATCTCATTCTCATCTCGAGACATGAGTCTTCCTTATT

                                    *           
       4455 CATAATCTCATTCTCATCTCGAGATATGAGTCTTCC
          1 CATAATCTCATTCTCATCTCGAGACATGAGTCTTCC

       4491 ATTTATACAA


Statistics
Matches: 70,  Mismatches: 7, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  41   70  1.00

ACGTcount: A:0.23, C:0.25, G:0.12, T:0.41


Consensus pattern (41 bp):   
CATAATCTCATTCTCATCTCGAGACATGAGTCTTCCTTATT

Found at i:5379 original size:22 final size:21

Alignment explanation


    Indices: 5332--5379  Score: 51
    Period size: 22  Copynumber: 2.2  Consensus size: 21

       5322 GACTTTCATA

                              *  
       5332 ATTAACTTAATTAATCATCTT
          1 ATTAACTTAATTAATCATATT

            *            *   *    
       5353 TTTAACCTTAATTTATCCTATT
          1 ATTAA-CTTAATTAATCATATT

                 
       5375 ATTAA
          1 ATTAA

       5380 TCA


Statistics
Matches: 21,  Mismatches: 5, Indels: 1
        0.78            0.19        0.04

Matches are distributed among these distances:
  21    4  0.19
  22   17  0.81

ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50


Consensus pattern (21 bp):   
ATTAACTTAATTAATCATATT
Done.