Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006946.1 Kokia drynarioides strain JFW-HI SEQ_121551, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22617
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:5877 original size:101 final size:101

Alignment explanation


    Indices: 5701--5888  Score: 306
    Period size: 101  Copynumber: 1.9  Consensus size: 101

       5691 GGACTTTGAC

                                             *     *                 *       
       5701 AAGGAGATCCTTTGAGCTCCTTTTTGTTCTTATTTGTATGGAGGGATTATCCACATTGTTGAGGT
          1 AAGGAGATCCTTTGAGCTCCTTTTTGTTCTTATCTGTATAGAGGGATTATCCACATTATTGAGGT

                                                
       5766 TGGCAATGCAGGATAAGATTTTTGTTCTTATCTGTA
         66 TGGCAATGCAGGATAAGATTTTTGTTCTTATCTGTA

                     *                                                       
       5802 AAGGAGATCTTTTGAGC-CCATTTTTGTTCTTATCTGTATAGAGGGATTATCCACATTATTGAGG
          1 AAGGAGATCCTTTGAGCTCC-TTTTTGTTCTTATCTGTATAGAGGGATTATCCACATTATTGAGG

                * *                
       5866 TTGGTAGTGCAGGATAAGATTTT
         65 TTGGCAATGCAGGATAAGATTTT

       5889 AAAGGGAGCA


Statistics
Matches: 80,  Mismatches: 6, Indels: 2
        0.91            0.07        0.02

Matches are distributed among these distances:
 100    2  0.03
 101   78  0.98

ACGTcount: A:0.23, C:0.12, G:0.24, T:0.40


Consensus pattern (101 bp):   
AAGGAGATCCTTTGAGCTCCTTTTTGTTCTTATCTGTATAGAGGGATTATCCACATTATTGAGGT
TGGCAATGCAGGATAAGATTTTTGTTCTTATCTGTA

Found at i:8149 original size:19 final size:20

Alignment explanation


    Indices: 8122--8172  Score: 70
    Period size: 19  Copynumber: 2.5  Consensus size: 20

       8112 CTGGTATTCA

                                
       8122 TTTATGGTTTTTAG-TTA-T
          1 TTTATGGTTTTTAGATTACT

                                 
       8140 TTTGATGGTTTTTAGATTACT
          1 TTT-ATGGTTTTTAGATTACT

                        
       8161 TTTATTGGTTTT
          1 TTTA-TGGTTTT

       8173 CTCAGTTTTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 5
        0.85            0.00        0.15

Matches are distributed among these distances:
  18    3  0.10
  19   11  0.38
  20    4  0.14
  21   11  0.38

ACGTcount: A:0.16, C:0.02, G:0.18, T:0.65


Consensus pattern (20 bp):   
TTTATGGTTTTTAGATTACT

Done.