Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006948.1 Kokia drynarioides strain JFW-HI SEQ_121553, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5780
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.32


Found at i:125 original size:27 final size:27

Alignment explanation


    Indices: 62--130  Score: 77
    Period size: 27  Copynumber: 2.6  Consensus size: 27

         52 ATAAGTACTG

                *      *       *       
         62 GGTGCCGCCTACCAGATGGGCACTATA
          1 GGTGTCGCCTATCAGATGGACACTATA

                      *               *
         89 GGTGTCGCCTGTCAGATGGACACTATT
          1 GGTGTCGCCTATCAGATGGACACTATA

                            
        116 GGTGGT-GCCTATCAG
          1 GGT-GTCGCCTATCAG

        131 GTAACCTTCA


Statistics
Matches: 35,  Mismatches: 6, Indels: 2
        0.81            0.14        0.05

Matches are distributed among these distances:
  27   33  0.94
  28    2  0.06

ACGTcount: A:0.19, C:0.25, G:0.32, T:0.25


Consensus pattern (27 bp):   
GGTGTCGCCTATCAGATGGACACTATA
Done.