Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006959.1 Kokia drynarioides strain JFW-HI SEQ_121564, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2307
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.39


Found at i:1449 original size:15 final size:16

Alignment explanation


    Indices: 1427--1469  Score: 65
    Period size: 14  Copynumber: 2.9  Consensus size: 16

       1417 ATTTATTTTC

                            
       1427 TATTATATTTTAATAA
          1 TATTATATTTTAATAA

                            
       1443 T-TTATA-TTTAA-AA
          1 TATTATATTTTAATAA

                          
       1456 TATTATATTTTAAT
          1 TATTATATTTTAAT

       1470 CACTAAATTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 6
        0.80            0.00        0.20

Matches are distributed among these distances:
  13    3  0.12
  14   10  0.42
  15   10  0.42
  16    1  0.04

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58


Consensus pattern (16 bp):   
TATTATATTTTAATAA

Done.