Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006960.1 Kokia drynarioides strain JFW-HI SEQ_121565, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2387
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.37


Found at i:1746 original size:23 final size:24

Alignment explanation


    Indices: 1697--1746  Score: 57
    Period size: 23  Copynumber: 2.1  Consensus size: 24

       1687 ATAATTACTT

                  *      *        * 
       1697 AAATTATTTAATTTTTTAAATTTA
          1 AAATTAATTAATTATTTAAATTGA

                               *    
       1721 AAATTAATT-ATTATTTAACTTGA
          1 AAATTAATTAATTATTTAAATTGA

               
       1744 AAA
          1 AAA

       1747 AACTAAAATA


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  23   14  0.64
  24    8  0.36

ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50


Consensus pattern (24 bp):   
AAATTAATTAATTATTTAAATTGA
Done.