Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000697.1 Kokia drynarioides strain JFW-HI SEQ_111698, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10367
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33


Found at i:1525 original size:2 final size:2

Alignment explanation


    Indices: 1477--1509  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       1467 ATTTTTCAAA

                                                              
       1477 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1510 GTTTAATTGT


Statistics
Matches: 30,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   29  0.97

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
AT
Done.