Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006973.1 Kokia drynarioides strain JFW-HI SEQ_121579, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5087
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:4994 original size:17 final size:17

Alignment explanation


    Indices: 4959--4997  Score: 51
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       4949 AGGTGGAGAA

                     **   *  
       4959 CTTGTTTGTTGAGAGTT
          1 CTTGTTTGTAAAGAATT

                             
       4976 CTTGTTTGTAAAGAATT
          1 CTTGTTTGTAAAGAATT

                 
       4993 CTTGT
          1 CTTGT

       4998 CAAGATGTAG


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.18, C:0.08, G:0.23, T:0.51


Consensus pattern (17 bp):   
CTTGTTTGTAAAGAATT
Done.