Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006975.1 Kokia drynarioides strain JFW-HI SEQ_121581, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8859
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:5287 original size:4 final size:4

Alignment explanation


    Indices: 5278--5303  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

       5268 GCTCAAAGTG

                                            
       5278 ATAC ATAC ATAC ATAC ATAC ATAC AT
          1 ATAC ATAC ATAC ATAC ATAC ATAC AT

       5304 TACGAAATAG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27


Consensus pattern (4 bp):   
ATAC

Found at i:5866 original size:46 final size:46

Alignment explanation


    Indices: 5809--5910  Score: 168
    Period size: 46  Copynumber: 2.2  Consensus size: 46

       5799 CGAGCAGTAT

                  *                                       
       5809 CCAATCCAGTATACCAGTCGATTCTCGATCTTATCAATCCAACTAA
          1 CCAATCTAGTATACCAGTCGATTCTCGATCTTATCAATCCAACTAA

                           *         *                    
       5855 CCAATCTAGTATACCGGTCGATTCTTGATCTTATCAATCCAACTAA
          1 CCAATCTAGTATACCAGTCGATTCTCGATCTTATCAATCCAACTAA

               *      
       5901 CCAGTCTAGT
          1 CCAATCTAGT

       5911 CATGTTCTAA


Statistics
Matches: 52,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  46   52  1.00

ACGTcount: A:0.30, C:0.28, G:0.11, T:0.30


Consensus pattern (46 bp):   
CCAATCTAGTATACCAGTCGATTCTCGATCTTATCAATCCAACTAA
Done.