Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000698.1 Kokia drynarioides strain JFW-HI SEQ_111699, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1770
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:1740 original size:32 final size:32

Alignment explanation


    Indices: 1704--1765  Score: 115
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       1694 AGCTTTTGGT

                                            
       1704 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
          1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA

                  *                       
       1736 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
          1 TTTTTCATGTTGTCAAAGAGTTGAACAATG

       1766 AAAAT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   29  1.00

ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39


Consensus pattern (32 bp):   
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Done.